Alternatives and similar repositories for GIANT

Users that are interested in GIANT are comparing it to the libraries listed below

• OSU-BMBL / scGNN2.0
  ☆12Updated last year
• rpmccordlab / SMILE
  SMILE: Mutual Information Learning for Integration of Single Cell Omics Data
  ☆11Updated 2 years ago
• MarioniLab / oor_benchmark
  A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data
  ☆13Updated 11 months ago
• veltenlab / mitoClone
  ☆12Updated 4 years ago
• MarioniLab / oor_design_reproducibility
  ☆16Updated 2 years ago
• CostaLab / MOJITOO
  MOJITOO: a fast and universal method for integration of multimodal single cell data
  ☆11Updated 11 months ago
• tanaylab / embflow
  ☆12Updated 2 years ago
• FertigLab / pycogaps
  python API to the CoGAPS NMF package
  ☆19Updated 4 months ago
• jranek / EVI
  Integrating temporal gene expression modalities for trajectory inference and disease prediction
  ☆10Updated 3 years ago
• theislab / mubind
  Learning motif contributions to cell transitions using sequence features and graphs.
  ☆28Updated last year
• LKremer / scbs
  Python package with CLI for the analysis of single cell methylation data. Now known as MethSCAn: https://github.com/anders-biostat/MethSC…
  ☆12Updated last year
• shmohammadi86 / SCINET
  ☆18Updated 4 years ago
• azizilab / decipher
  A single-cell analysis toolkit to jointly analyze samples from distinct conditions
  ☆32Updated 5 months ago
• kaizhang / single-cell-benchmark
  ☆10Updated 2 years ago
• KrishnaswamyLab / Gene-Signal-Pattern-Analysis
  Learning meaningful representations of genes
  ☆19Updated 2 months ago
• theislab / moslin
  Code, data and analysis for moslin.
  ☆14Updated 11 months ago
• epigen / scifiRNA-seq_publication
  The million-scale method for single-cell analysis
  ☆10Updated 2 years ago
• Vivianstats / scINSIGHT
  Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data
  ☆22Updated last year
• ML4BM-Lab / ELATUS
  ☆13Updated 5 months ago
• kundajelab / ENCODE_scatac
  ☆10Updated 2 years ago
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆30Updated 6 months ago
• jingshuw / SAVERX
  R package for transfer learning of single-cell RNA-seq denoising
  ☆30Updated 3 years ago
• epigen / scifiRNA-seq
  ☆12Updated 4 years ago
• Teddy-XiongGZ / DeepGSEA
  ☆17Updated last year
• hsmaan / balanced-clustering
  Reworked clustering metrics for assessing performance in imbalanced settings
  ☆16Updated last year
• csglab / GEDI
  Gene Expression Decomposition and Integration
  ☆19Updated 7 months ago
• stephenslab / gbcd
  R package for generalized binary covariance decomposition.
  ☆10Updated 2 months ago
• xinhe-lab / GSFA
  R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening …
  ☆22Updated last year
• CostaLab / PILOT
  Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)
  ☆21Updated 6 months ago
• visze / sequence_cnn_models
  ☆13Updated 8 months ago