GIANT (Gene-based data Integration and ANalysis Technique) is a method for large-scale joint analyses of atlas-level single cell data.
☆14Jun 13, 2023Updated 3 years ago
Alternatives and similar repositories for GIANT
Users that are interested in GIANT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆13Sep 30, 2024Updated 2 years ago
- A clustering algorithm that can perform internal validation inspired by forest fire dynamics and self-organized criticality☆18May 18, 2022Updated 4 years ago
- Paulsen, Velasco, Kedaigle, and Pigioni et. al., Nature 2022☆14Oct 26, 2020Updated 6 years ago
- ☆16Mar 15, 2023Updated 3 years ago
- MapQC - a metric for the evaluation of single-cell query-to-reference mappings☆12Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆18May 30, 2022Updated 4 years ago
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆22Jun 7, 2021Updated 5 years ago
- Vector representations of gene co-expression in single cell RNAseq.☆37Jun 7, 2026Updated 4 months ago
- Python package for CS-CORE, a statistical method for cell-type-specific co-expression inference from single cell RNA-sequencing data☆15Dec 11, 2023Updated 2 years ago
- Feature Selection in scRNA-seq☆11Sep 9, 2021Updated 5 years ago
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Jul 15, 2022Updated 4 years ago
- Trends in single cell papers☆17Sep 23, 2024Updated 2 years ago
- Combined clonality and transcriptome scRNAseq clustering method☆11Dec 3, 2022Updated 3 years ago
- R package for gene selection using k-NN graphs.☆15Jun 12, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆29Sep 4, 2023Updated 3 years ago
- Common Factor Integration & Transfer learning (cFIT) for single cell RNA-seq data☆13Jul 6, 2021Updated 5 years ago
- A package for making MuE observation models in Edward2.☆13Jun 10, 2021Updated 5 years ago
- mcRigor: a statistical method to enhance the rigor of metacell partitioning in single-cell data analysis☆17Apr 8, 2026Updated 6 months ago
- [Nature Communications] A foundation model for drug synergy analysis☆16Nov 17, 2025Updated 11 months ago
- ☆43Jun 11, 2022Updated 4 years ago
- R package for computing Association Plots☆17Nov 4, 2024Updated last year
- ☆13Jul 9, 2026Updated 3 months ago
- Genomic sequence preprocessing toolkit☆14Sep 26, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Code, data and analysis for moslin.☆15Oct 7, 2024Updated 2 years ago
- UZH Epi/Biostat Methods Seminar Spring 2020: Deep Learning☆13May 7, 2020Updated 6 years ago
- Pathway-based trajectory inference method for time-series scRNAseq data☆26May 18, 2021Updated 5 years ago
- cross-species analysis of cell identities, markers and regulations☆13Jul 11, 2025Updated last year
- Analysis code for the TAP-seq manuscript.☆13Jun 25, 2021Updated 5 years ago
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆34Nov 28, 2025Updated 11 months ago
- 📝 [Tutorial] RepSeq data mining basics in R☆10Mar 13, 2019Updated 7 years ago
- GENOT: Generative Neural Optimal Transport☆19Dec 18, 2024Updated last year
- SemI-SUpervised generative Autoencoder models for single cell data☆18Mar 30, 2021Updated 5 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Supplementary files and notebooks to recreate figures.☆24Aug 4, 2026Updated 2 months ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Mar 7, 2025Updated last year
- ☆48Apr 18, 2020Updated 6 years ago
- R package for transfer learning of single-cell RNA-seq denoising☆32Jun 14, 2022Updated 4 years ago
- mmCIF-based extension dictionary for computed structure models☆24Feb 5, 2026Updated 8 months ago
- ☆13Feb 16, 2019Updated 7 years ago
- Reconstruct the lineage topology of a scRNA-seq differentiation dataset.☆19Jun 25, 2020Updated 6 years ago