markrobinsonuzh / scRNAseq_clustering_comparison
A study to compare methods for clustering of scRNA-seq data
☆42Updated 8 months ago
Alternatives and similar repositories for scRNAseq_clustering_comparison:
Users that are interested in scRNAseq_clustering_comparison are comparing it to the libraries listed below
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆44Updated 8 years ago
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆47Updated 4 years ago
- ☆28Updated 6 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 2 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆37Updated 3 years ago
- ☆38Updated 4 years ago
- ☆20Updated 5 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 5 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated last year
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆42Updated 4 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- Single-cell Scalable Visualization and Analytics☆25Updated 5 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated 11 months ago
- ☆37Updated 8 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data. This is a novel R package of the RaceID3 and S…☆43Updated 3 months ago
- R Data: Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations☆27Updated 4 years ago
- ☆36Updated last year
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Updated 6 years ago
- Fast motif matching in R☆46Updated last year
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Updated 6 years ago
- An analytics package for single cell data☆22Updated 2 years ago
- Predicted cell-cell interactions of the aging mouse brain☆20Updated 5 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 4 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 4 years ago
- supporting code for the multinomial single cell RNA-Seq paper☆51Updated 4 years ago
- scNMT-seq gastrulation☆42Updated 2 years ago
- ☆53Updated 4 years ago
- post-clustering differential expression test☆35Updated 5 years ago