Alternatives and similar repositories for scRNAseq_clustering_comparison:

Users that are interested in scRNAseq_clustering_comparison are comparing it to the libraries listed below

• pachterlab / NYMP_2018
  ☆28Updated 6 years ago
• shenorrLabTRDF / cellAlign
  ☆38Updated 4 years ago
• ambrosejcarr / seqc
  Single-Cell Sequencing Quality Control and Processing Software
  ☆30Updated 5 years ago
• SUwonglab / scABC
  ☆19Updated 5 years ago
• dgrun / RaceID
  Algorithm for the inference of cell types from single-cell RNA-seq data.
  ☆44Updated 8 years ago
• pachterlab / GFCP_2022
  RNA velocity validation
  ☆23Updated 2 years ago
• icbi-lab / immune_deconvolution_benchmark
  Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…
  ☆42Updated 4 years ago
• lhe17 / nebula
  ☆35Updated 11 months ago
• MSingerLab / COMETSC
  COMET Single-Cell Marker Detection tool
  ☆31Updated 2 years ago
• broadinstitute / single_cell_classification
  Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles
  ☆29Updated 4 years ago
• BaderLab / AgingMouseBrainCCInx
  Predicted cell-cell interactions of the aging mouse brain
  ☆20Updated 5 years ago
• jdime / scRNAseq_cell_cluster_labeling
  Scripts to run and benchmark scRNA-seq cell cluster labeling methods
  ☆47Updated 4 years ago
• klarman-cell-observatory / scSVA
  Single-cell Scalable Visualization and Analytics
  ☆25Updated 5 years ago
• dgrun / RaceID3_StemID2_package
  Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data. This is a novel R package of the RaceID3 and S…
  ☆43Updated 2 months ago
• lanagarmire / NMFEM
  ☆15Updated 7 years ago
• khodosevichlab / CellAnnotatoR
  Automated marker-based annotation of cell types
  ☆13Updated 2 years ago
• theMILOlab / SPATA
  SPATA Package for spatial gene expression analysis
  ☆21Updated 2 years ago
• ncbi / scPopCorn
  A python tool to do comparative analysis of mulitple single cell datasets.
  ☆21Updated 5 years ago
• seasoncloud / Alleloscope
  Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…
  ☆29Updated last year
• bioinfoDZ / RISC
  A R package for integrated scRNA-seq data analysis using the RPCI algorithm
  ☆44Updated 10 months ago
• WeiqiangZhou / BIRD
  Big data Regression for predicting DNase I hypersensitivity
  ☆30Updated 5 months ago
• wzthu / esATAC
  Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis
  ☆23Updated 2 years ago
• LTLA / batchelor
  Clone of the Bioconductor repository for the batchelor package.
  ☆16Updated 7 months ago
• wmacnair / psupertime
  psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels
  ☆38Updated 2 years ago
• shendurelab / single-cell-ko-screens
  Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…
  ☆26Updated 3 years ago
• powellgenomicslab / DropletQC
  Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data
  ☆35Updated 3 years ago
• Neurosurgery-Brain-Tumor-Center-DiazLab / CONICS
  CONICS: COpy-Number analysis In single-Cell RNA-Sequencing
  ☆74Updated last year
• satijalab / Integration2019
  ☆16Updated 5 years ago
• caleblareau / gchromVAR
  Cell type specific enrichments using finemapped variants and quantitative epigenetic data
  ☆42Updated last year
• biobenkj / compartmap
  Reconstruction of higher order chromatin from scRNA-seq and scATAC-seq
  ☆13Updated last year