Alternatives and similar repositories for OT-scOmics:

Users that are interested in OT-scOmics are comparing it to the libraries listed below

• willtownes / nsf-paper
  Nonnegative spatial factorization for multivariate count data
  ☆58Updated last year
• Murali-group / BoolODE
  Git Repo for simulating Boolean Models
  ☆33Updated 10 months ago
• PayamDiba / SERGIO
  A simulator for single-cell expression data guided by gene regulatory networks
  ☆60Updated 11 months ago
• Bertinus / FLeCS
  Functional and Learnable Cell dynamicS
  ☆15Updated last month
• klarman-cell-observatory / scPhere
  ☆99Updated 2 years ago
• zcang / SpaOTsc
  ☆45Updated 2 years ago
• KrishnaswamyLab / scprep
  A collection of scripts and tools for loading, processing, and handling single cell data.
  ☆72Updated last year
• KrishnaswamyLab / AAnet
  Archetypal Analysis network (AAnet)
  ☆33Updated 2 months ago
• aristoteleo / Scribe-py
  Regulatory networks with Direct Information in python
  ☆40Updated 2 years ago
• YosefLab / SymSim
  ☆25Updated 6 months ago
• scverse / scvi-tools-skeleton
  Template repository for creating novel models with scvi-tools
  ☆20Updated 2 years ago
• ManchesterBioinference / GPcounts
  Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods
  ☆21Updated last month
• andrewcharlesjones / spatial-alignment
  Alignment of spatial genomics data using deep Gaussian processes
  ☆27Updated 2 years ago
• berenslab / umi-normalization
  Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…
  ☆40Updated 2 years ago
• willtownes / glmpca-py
  generalized principal component analysis (GLM-PCA) implemented in python
  ☆60Updated 4 years ago
• Genentech / sVAE
  ☆60Updated last year
• rsinghlab / SCOT
  Gromov-Wasserstein based optimal transport for aligning single-cell multi-omics data
  ☆70Updated last year
• calico / velodyn
  Dynamical systems methods for RNA velocity analysis
  ☆24Updated 3 years ago
• canzarlab / JVis-learn
  ☆20Updated 3 years ago
• calico / scnym
  Semi-supervised adversarial neural networks for classification of single cell transcriptomics data
  ☆74Updated 3 months ago
• Teichlab / MultiMAP
  MultiMAP for integration of single cell multi-omics
  ☆55Updated last year
• theislab / trVAE
  Conditional out-of-distribution prediction
  ☆59Updated 8 months ago
• ma-compbio / SpiceMix
  spatial transcriptome, single cell
  ☆68Updated 2 years ago
• theislab / ncem
  Learning cell communication from spatial graphs of cells
  ☆110Updated last year
• gifford-lab / prescient
  Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.
  ☆46Updated 3 months ago
• AltschulerWu-Lab / scScope
  ☆49Updated 5 years ago
• KrishnaswamyLab / MELD
  Quantifying experimental perturbations at single cell resolution
  ☆106Updated 6 months ago
• sfortma2 / scranPY
  A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing
  ☆34Updated last year
• cbg-ethz / scDEF
  Deep exponential families for single-cell data.
  ☆21Updated 5 months ago
• saezlab / omnipath
  Python client for the OmniPath web service
  ☆44Updated last month