fperraudeau / singlecellworkflowLinks
Tutorial for the analysis of scRNA-seq data in R
☆18Updated 6 years ago
Alternatives and similar repositories for singlecellworkflow
Users that are interested in singlecellworkflow are comparing it to the libraries listed below
Sorting:
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- Mean Alterations Using Discrete Expression☆14Updated last year
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- Single cell interactive plotting tools☆23Updated 5 years ago
- pipelines to process scRNA-seq data☆12Updated 4 years ago
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆27Updated last year
- Client to access ExperimentHub resources☆10Updated last month
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 2 years ago
- Code associated with MIX-seq manuscript☆15Updated 4 years ago
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- 🐶 hlabud: HLA genotype analysis in R☆16Updated 2 months ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 3 years ago
- Human brain, >200,000 nuclei☆24Updated 4 years ago
- Code used for the single-cell RNA-Seq batch effects paper☆10Updated 7 years ago
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆14Updated 4 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆13Updated 6 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated 2 years ago
- Inference of switch-like differential expression along single-cell trajectories☆20Updated 7 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 4 years ago
- RNA velocity validation☆22Updated 3 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆38Updated 3 years ago
- ☆12Updated last year
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆10Updated 6 years ago
- ☆12Updated 4 years ago
- Efficiently compute robust markers across single-cell datasets☆11Updated 4 years ago
- Repository for supplemental material of manuscripts☆18Updated 3 years ago
- ☆17Updated last year
- ☆19Updated 7 years ago
- dropseq-based single nuclei genomic accessibility and RNA expression (SNARE-seq) preprocessing pipeline☆9Updated 5 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 7 years ago