fperraudeau / singlecellworkflowLinks
Tutorial for the analysis of scRNA-seq data in R
☆18Updated 7 years ago
Alternatives and similar repositories for singlecellworkflow
Users that are interested in singlecellworkflow are comparing it to the libraries listed below
Sorting:
- Code associated with MIX-seq manuscript☆15Updated 5 years ago
- Comparison of dimensionality reduction methods☆30Updated 5 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 8 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆30Updated 5 years ago
- ☆14Updated 6 years ago
- pipelines to process scRNA-seq data☆12Updated 5 years ago
- HSCI/Catalyst Single-cell RNA-Seq Workshop☆19Updated 6 years ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 3 years ago
- Beta-Poisson model for single-cell RNA-seq data analyses☆16Updated 7 years ago
- ☆16Updated 7 years ago
- ☆19Updated 4 years ago
- Code used for the single-cell RNA-Seq batch effects paper☆10Updated 8 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated 2 years ago
- R package for benchmarking single cell analysis methods☆32Updated 2 years ago
- kallisto index tag extractor☆20Updated 6 years ago
- Trans-association between HLA and TCR-CDR3☆19Updated 2 years ago
- A study to compare methods for clustering of scRNA-seq data☆45Updated last year
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆18Updated 2 months ago
- R package of techniques for comparing clusterings of single-cell sequencing data☆41Updated last year
- ☆13Updated 6 years ago
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆28Updated last year
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆19Updated 4 years ago
- Repository for supplemental material of manuscripts☆18Updated 4 years ago
- An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.☆28Updated 2 years ago
- ☆17Updated last year
- Single cell interactive plotting tools☆24Updated 5 years ago
- ☆20Updated 8 years ago
- 🧭 Navigate single-cell RNA-seq datasets in your web browser.☆30Updated 2 years ago
- Inference of switch-like differential expression along single-cell trajectories☆22Updated 8 years ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 6 years ago