fperraudeau / singlecellworkflowLinks
Tutorial for the analysis of scRNA-seq data in R
☆18Updated 6 years ago
Alternatives and similar repositories for singlecellworkflow
Users that are interested in singlecellworkflow are comparing it to the libraries listed below
Sorting:
- ☆16Updated 6 years ago
- Code associated with MIX-seq manuscript☆15Updated 4 years ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- Comparison of dimensionality reduction methods☆30Updated 5 years ago
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Updated 6 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆13Updated 6 years ago
- pipelines to process scRNA-seq data☆12Updated 4 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 4 years ago
- Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"☆23Updated 4 years ago
- Beta-Poisson model for single-cell RNA-seq data analyses☆16Updated 6 years ago
- Examples analyses using the single-cell RNA-seq data from mouse cell atlases☆23Updated 5 years ago
- ☆14Updated 6 years ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 3 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated 2 years ago
- Mean Alterations Using Discrete Expression☆14Updated last year
- Single cell interactive plotting tools☆23Updated 4 years ago
- R package for benchmarking single cell analysis methods☆31Updated last year
- Repository for supplemental material of manuscripts☆18Updated 3 years ago
- R package of techniques for comparing clusterings of single-cell sequencing data☆38Updated last year
- ☆12Updated 4 years ago
- XEnograft Visualization & Analysis☆11Updated 2 months ago
- Repository for the Epigenomics Tutorial hold at ISMB 2017 in Prague☆14Updated 4 years ago
- R/Bioconductor package to interactively explore single cell clusters at multiple resolutions☆10Updated 3 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- ☆17Updated last year
- ☆16Updated 3 years ago
- The KEGGgraph package to parse KEGG pathways in R into graph objects☆13Updated last month
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆10Updated 6 years ago
- ☆13Updated 6 years ago