caleblareau / gchromVARView external linksLinks
Cell type specific enrichments using finemapped variants and quantitative epigenetic data
☆47Sep 1, 2023Updated 2 years ago
Alternatives and similar repositories for gchromVAR
Users that are interested in gchromVAR are comparing it to the libraries listed below
Sorting:
- Data/analysis repository for "Interrogation of human hematopoiesis..." paper☆20Jul 9, 2019Updated 6 years ago
- Code for creating cell-type-specific regulatory element annotation files☆19Jun 11, 2024Updated last year
- Robust Allele Specific Quantification and quality controL☆40Dec 13, 2021Updated 4 years ago
- SAME (Single-cell RNA-seq Aggregated clustering via Mixture model Ensemble): Cluster ensemble for single-cell RNA-seq data☆15May 4, 2021Updated 4 years ago
- Computational identification of targets for CAR-T cell therapy in AML☆21Dec 25, 2022Updated 3 years ago
- A GWAS fine-mapping pipeline used in CAUSALdb☆27May 1, 2022Updated 3 years ago
- SCAVENGE is a method to optimize the inference of functional and genetic associations to specific cells at single-cell resolution.☆91Sep 1, 2023Updated 2 years ago
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆445Feb 18, 2025Updated 11 months ago
- Code and analyses from "FDR: A New Deal" paper☆15Apr 18, 2017Updated 8 years ago
- A collection of modules to process and analyze IMGT-HLA sequences.☆29Dec 18, 2022Updated 3 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Apr 16, 2020Updated 5 years ago
- An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified…☆22Oct 27, 2021Updated 4 years ago
- chromatin Variability Across Regions (of the genome!)☆185Jul 10, 2024Updated last year
- Fast motif matching in R☆46Jan 24, 2024Updated 2 years ago
- CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq☆23Aug 20, 2024Updated last year
- Mediated Expression Score Regression (MESC)☆27Nov 4, 2025Updated 3 months ago
- R package of colors for the Buenrostro Lab☆86Aug 21, 2024Updated last year
- cEll tyPe enrIChment☆16Dec 11, 2022Updated 3 years ago
- Riborex: Fast and flexible identification of differential translation from Ribo-seq data☆12Apr 9, 2021Updated 4 years ago
- Faster manipulation of dendrogram objects in R.☆15May 22, 2015Updated 10 years ago
- integrative pathway analysis with modern PCA methodology and gene selection☆11Jun 29, 2023Updated 2 years ago
- Reproducible GSEA Benchmarking☆14Oct 30, 2025Updated 3 months ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Aug 22, 2017Updated 8 years ago
- Workshop materials for cBioPortal Webinar 5: API & R Client☆19May 28, 2020Updated 5 years ago
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆143Apr 5, 2024Updated last year
- ☆12Feb 6, 2024Updated 2 years ago
- Toolkit for single-cell analysis of chromatin accessibility☆12Feb 27, 2020Updated 5 years ago
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- Gene Set + S2G strategy annotations analyzed for disease architecture☆59Nov 18, 2022Updated 3 years ago
- Publication Page for Satpathy*, Granja* et al 2019☆95Apr 29, 2020Updated 5 years ago
- Analysis Pipeline for Single Cell ATAC-seq☆322Apr 27, 2023Updated 2 years ago
- Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)☆246Jan 31, 2026Updated 2 weeks ago
- ☆90Jul 21, 2025Updated 6 months ago
- Code relevant to sci-ATAC-seq of Drosophila embryogenesis.☆22Jun 9, 2019Updated 6 years ago
- DENTIST (Detecting Errors iN analyses of summary staTISTics) is a QC tool for summary-data-based analyses.☆27Oct 5, 2023Updated 2 years ago
- Quantitative Allele Specific Analysis of Reads. Joint genotyping & ASE inference for RNA-seq data☆27Feb 4, 2017Updated 9 years ago
- An R package to construct Elastic Principal Graphs☆24Nov 29, 2019Updated 6 years ago
- SOMatic is a tool for building Self-Organizing Maps and linking multiple maps.☆14Aug 29, 2024Updated last year
- Normalization for single cell RNA-seq data☆51Jun 11, 2025Updated 8 months ago