Cell type specific enrichments using finemapped variants and quantitative epigenetic data
☆50Sep 1, 2023Updated 3 years ago
Alternatives and similar repositories for gchromVAR
Users that are interested in gchromVAR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Data/analysis repository for "Interrogation of human hematopoiesis..." paper☆21Jul 9, 2019Updated 7 years ago
- Code for creating cell-type-specific regulatory element annotation files☆21Jun 11, 2024Updated 2 years ago
- chromatin Variability Across Regions (of the genome!)☆197May 1, 2026Updated 5 months ago
- Robust Allele Specific Quantification and quality controL☆42Dec 13, 2021Updated 4 years ago
- A GWAS fine-mapping pipeline used in CAUSALdb☆27May 1, 2022Updated 4 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆465Feb 18, 2025Updated last year
- SAME (Single-cell RNA-seq Aggregated clustering via Mixture model Ensemble): Cluster ensemble for single-cell RNA-seq data☆16May 4, 2021Updated 5 years ago
- cEll tyPe enrIChment☆17Dec 11, 2022Updated 3 years ago
- SOMatic is a tool for building Self-Organizing Maps and linking multiple maps.☆14Aug 29, 2024Updated 2 years ago
- R package of colors for the Buenrostro Lab☆91Aug 21, 2024Updated 2 years ago
- Computational identification of targets for CAR-T cell therapy in AML☆22Dec 25, 2022Updated 3 years ago
- Toolkit for single-cell analysis of chromatin accessibility☆13Feb 27, 2020Updated 6 years ago
- ☆23Jul 3, 2019Updated 7 years ago
- Riborex: Fast and flexible identification of differential translation from Ribo-seq data☆12Apr 9, 2021Updated 5 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- SCAVENGE is a method to optimize the inference of functional and genetic associations to specific cells at single-cell resolution.☆95Sep 1, 2023Updated 3 years ago
- A collection of modules to process and analyze IMGT-HLA sequences.☆29Dec 18, 2022Updated 3 years ago
- Single-cell disease relevance score (scDRS)☆200Aug 27, 2026Updated last month
- Make interactive LocusZoom plots from a local GWAS file☆10May 9, 2025Updated last year
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Apr 16, 2020Updated 6 years ago
- Code relevant to sci-ATAC-seq of Drosophila embryogenesis.☆22Jun 9, 2019Updated 7 years ago
- Fast motif matching in R☆49Jan 24, 2024Updated 2 years ago
- An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified…☆22Oct 27, 2021Updated 4 years ago
- DENTIST (Detecting Errors iN analyses of summary staTISTics) is a QC tool for summary-data-based analyses.☆29Oct 5, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq☆26Aug 20, 2024Updated 2 years ago
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆149Apr 5, 2024Updated 2 years ago
- Instructions and analysis scripts for single cell Higher Order Testing (scHOT)☆10Oct 7, 2020Updated 6 years ago
- ☆100Jul 21, 2025Updated last year
- Materials presented at the BiocNYC meet-up☆12Nov 29, 2018Updated 7 years ago
- Analysis Pipeline for Single Cell ATAC-seq☆321Apr 27, 2023Updated 3 years ago
- ☆17Apr 2, 2023Updated 3 years ago
- ☆12Mar 18, 2026Updated 6 months ago
- Machine Learning to Detect Cancer Biomarkers from RNAseq Data☆36Aug 9, 2019Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Workshop materials for cBioPortal Webinar 5: API & R Client☆20May 28, 2020Updated 6 years ago
- Reproducing all analyses and figures for the ASAP-seq paper☆29Jun 11, 2021Updated 5 years ago
- Gene Set + S2G strategy annotations analyzed for disease architecture☆62Nov 18, 2022Updated 3 years ago
- AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-…☆104Jul 7, 2022Updated 4 years ago
- An R package to construct Elastic Principal Graphs☆24Nov 29, 2019Updated 6 years ago
- Create regional association plots from GWAS or meta-analysis☆64Jan 21, 2020Updated 6 years ago
- Mediated Expression Score Regression (MESC)☆30Nov 4, 2025Updated 11 months ago