Analysis code for the TAP-seq manuscript.
☆13Jun 25, 2021Updated 5 years ago
Alternatives and similar repositories for TAPseq_manuscript
Users that are interested in TAPseq_manuscript are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code relevant to sci-ATAC-seq of Drosophila embryogenesis.☆22Jun 9, 2019Updated 7 years ago
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆19Apr 20, 2024Updated 2 years ago
- ☆19Jun 2, 2022Updated 4 years ago
- Code associated with MIX-seq manuscript☆16Aug 26, 2020Updated 6 years ago
- 📝 [Tutorial] RepSeq data mining basics in R☆10Mar 13, 2019Updated 7 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Space- and time-optimal algorithms for large single-cell expression matrices, with a focus on single-cell CRISPR screens.☆12Jul 31, 2026Updated 2 months ago
- Probability Model of Accessible Chromatin of Single cells☆11Aug 14, 2026Updated 2 months ago
- ☆13Jan 27, 2025Updated last year
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆42Updated this week
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆28Jan 25, 2022Updated 4 years ago
- ☆12Dec 10, 2025Updated 10 months ago
- Combined clonality and transcriptome scRNAseq clustering method☆11Dec 3, 2022Updated 3 years ago
- ☆13Feb 2, 2023Updated 3 years ago
- R package for single-cell comparative regulatory analysis☆13Jun 26, 2021Updated 5 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- SCENIC+ analyses☆20Sep 26, 2023Updated 3 years ago
- Fast algorithms for GLM-PCA.☆19Mar 12, 2025Updated last year
- CHANGE-seq analysis pipeline☆13Sep 14, 2026Updated last month
- CCCvelo: Decoding dynamic cell-cell communication-driven cell state transitions in spatial transcriptomics☆13Sep 14, 2026Updated last month
- ☆13Nov 20, 2023Updated 2 years ago
- ChromSCape☆15Jul 30, 2025Updated last year
- ☆14Nov 3, 2023Updated 2 years ago
- This repository contains the code for reproducing all the results and figures from the preprint "Isoform specificity in the mouse primary…☆16Jul 16, 2021Updated 5 years ago
- Empirical Bayes methods for single cell data☆18Oct 12, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Mean Alterations Using Discrete Expression☆14Apr 9, 2024Updated 2 years ago
- Fast and Scalable Single Cell Differential Expression Analysis using Mixed-effects Models☆14Apr 8, 2026Updated 6 months ago
- Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"☆11Sep 30, 2019Updated 7 years ago
- Mutation rate analysis of autosomal loci☆15Jun 25, 2020Updated 6 years ago
- ☆16Sep 18, 2026Updated last month
- Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"☆24Dec 20, 2018Updated 7 years ago
- MapQC - a metric for the evaluation of single-cell query-to-reference mappings☆12Updated this week
- R implementation of integration metrics for single-cell data☆14Sep 23, 2026Updated last month
- ☆19Mar 31, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Homework for STAT 205A - Berkeley☆13Dec 9, 2014Updated 11 years ago
- ☆10Oct 31, 2021Updated 4 years ago
- A framework based on AlphaFold3 to improve the specificity of genome editor☆18Jun 1, 2026Updated 4 months ago
- Summary statistics for repertoires☆18Feb 1, 2023Updated 3 years ago
- Code repository for the snRNA-seq cross-tissue atlas project☆21Feb 22, 2022Updated 4 years ago
- Spectral Alignment of Graphs☆11Mar 26, 2017Updated 9 years ago
- Multi-nucleotide variants (MNVs) in gnomAD 2.1☆14Updated this week