☆68May 17, 2026Updated 5 months ago
Alternatives and similar repositories for harmony-pytorch
Users that are interested in harmony-pytorch are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Single-cell differential expression☆22Updated this week
- A tool for analyzing trascriptomes of millions of single cells.☆98Sep 28, 2026Updated last month
- 🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.☆289Oct 26, 2026Updated last week
- Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)☆31May 16, 2025Updated last year
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆58Sep 24, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆268Mar 14, 2026Updated 7 months ago
- Reference mapping for single-cell genomics☆414Jun 26, 2026Updated 4 months ago
- A package to help convert different single-cell data formats to each other☆470Feb 20, 2026Updated 8 months ago
- Panoramic stitching of single cell data☆295Jul 14, 2025Updated last year
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆75Jul 9, 2026Updated 3 months ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆36May 19, 2026Updated 5 months ago
- Code, data and analysis for moslin.☆15Oct 7, 2024Updated 2 years ago
- Geometry-preserving random sampling☆98Oct 29, 2024Updated 2 years ago
- ☆41Jun 24, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Biology-centered data-driven quality control for scRNA-seq☆22May 22, 2023Updated 3 years ago
- CellRank: dynamics from multi-view single-cell data☆459Updated this week
- Python package for conversions between ENSEMBL IDs and gene names (annotables + pyensembl)☆12Feb 2, 2026Updated 9 months ago
- Python package to perform enrichment analysis from omics data.☆301Updated this week
- Interfaces for HDF5-based Single Cell File Formats☆177Nov 4, 2023Updated 3 years ago
- Probability Model of Accessible Chromatin of Single cells☆11Aug 14, 2026Updated 2 months ago
- ☆17Sep 8, 2024Updated 2 years ago
- Single-cell perturbation analysis☆357Updated this week
- Benchmarking analysis of data integration tools☆436Apr 27, 2026Updated 6 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- A Bayesian model for compositional single-cell data analysis☆205Jan 13, 2026Updated 9 months ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆70Oct 2, 2026Updated last month
- AOE (All Of gene Expression): Index and meta-analysis of gene expression data that works☆12Apr 15, 2022Updated 4 years ago
- Quasilinear data representations for single-cell omics data analysis☆42May 4, 2023Updated 3 years ago
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆510Oct 15, 2026Updated 3 weeks ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆206Aug 24, 2026Updated 2 months ago
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Jul 15, 2022Updated 4 years ago
- data and model repository for single-cell data☆135Dec 21, 2023Updated 2 years ago
- Distributed single-cell data analysis.☆40Updated this week
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Transformer for One-Stop Interpretable Cell-type Annotation☆153Updated this week
- Fast array utilities☆15Updated this week
- SingleCellFusion--a tool to integrate single-cell transcriptome and epigenome data☆13Mar 13, 2022Updated 4 years ago
- Spatial Single Cell Analysis in Python☆612Updated this week
- 🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transc…☆220Updated this week
- benchmark for single-cell RNA-seq imputation methods☆30Mar 16, 2024Updated 2 years ago
- Lightweight GPU-accelerated spatial operations for spatial omics, with CUDA kernels and Python APIs for point-in-polygon queries, overlap…☆15Updated this week