lilab-bcb / harmony-pytorchLinks
☆56Updated 5 months ago
Alternatives and similar repositories for harmony-pytorch
Users that are interested in harmony-pytorch are comparing it to the libraries listed below
Sorting:
- Python implementation of Milo for differential abundance testing on KNN graph☆74Updated 8 months ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆122Updated 2 weeks ago
- Single cell omics biology annotations☆51Updated 6 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆65Updated 3 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆66Updated 3 weeks ago
- Geometry-preserving random sampling☆89Updated 11 months ago
- Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with mill…☆105Updated 6 months ago
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…☆66Updated last year
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆31Updated 2 weeks ago
- ☆45Updated 2 weeks ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆55Updated last year
- Single-Cell Clustering Assessment Framework☆105Updated last year
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- Python implementation of the Slingshot pseudotime algorithm☆66Updated last week
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆55Updated 4 months ago
- software to detect doublets☆95Updated 9 months ago
- pseudobulking on an AnnData object☆34Updated 7 months ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆50Updated 9 months ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆80Updated 7 months ago
- Non-parametric density inference for single-cell analysis.☆72Updated 5 months ago
- ☆56Updated 7 years ago
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆65Updated last month
- Multi-omics factor analysis v2☆52Updated last year
- Information-based dimensionality reduction☆29Updated 10 months ago
- ☆61Updated 4 years ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆46Updated 4 years ago
- Metacells - Single-cell RNA Sequencing Analysis☆113Updated last year
- ☆83Updated this week
- Gene regulatory network containing signed transcription factor-target gene interactions☆89Updated 4 months ago