lilab-bcb / harmony-pytorchLinks
☆58Updated 6 months ago
Alternatives and similar repositories for harmony-pytorch
Users that are interested in harmony-pytorch are comparing it to the libraries listed below
Sorting:
- Python implementation of Milo for differential abundance testing on KNN graph☆76Updated 9 months ago
- Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with mill…☆109Updated 2 weeks ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆123Updated last week
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆66Updated 4 months ago
- Geometry-preserving random sampling☆95Updated last year
- Single-Cell Clustering Assessment Framework☆107Updated 2 years ago
- Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…☆65Updated 3 weeks ago
- Single cell omics biology annotations☆50Updated 7 months ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆56Updated last year
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆50Updated 10 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆67Updated last month
- software to detect doublets☆95Updated 11 months ago
- Python implementation of the Slingshot pseudotime algorithm☆66Updated last month
- pseudobulking on an AnnData object☆34Updated 8 months ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆33Updated last month
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- Quasilinear data representations for single-cell omics data analysis☆44Updated 2 years ago
- Multi-omics factor analysis v2☆54Updated last month
- Non-parametric density inference for single-cell analysis.☆73Updated 6 months ago
- Multi-omic velocity inference☆113Updated last year
- Convert between AnnData and SingleCellExperiment☆142Updated last week
- ☆61Updated 4 years ago
- A python package for chromVAR☆31Updated 2 years ago
- CZ CELLxGENE Discover Census☆114Updated last week
- ☆84Updated this week
- ☆48Updated last week
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆77Updated 2 months ago
- Python package to perform normalization and variance-stabilization of single-cell data☆25Updated 4 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆56Updated 6 months ago
- R package to access DoRothEA's regulons☆154Updated last year