lilab-bcb / harmony-pytorch
☆50Updated last year
Alternatives and similar repositories for harmony-pytorch:
Users that are interested in harmony-pytorch are comparing it to the libraries listed below
- Python implementation of Milo for differential abundance testing on KNN graph☆62Updated last year
- Geometry-preserving random sampling☆78Updated 3 months ago
- Single cell omics biology annotations☆48Updated this week
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆59Updated 7 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆60Updated 9 months ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆52Updated 5 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Single-Cell Clustering Assessment Framework☆97Updated last year
- pseudobulking on an AnnData object☆28Updated last year
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆44Updated last week
- Python package to perform normalization and variance-stabilization of single-cell data☆23Updated 2 years ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated last year
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆28Updated 2 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆47Updated 3 months ago
- ☆67Updated this week
- Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…☆57Updated 10 months ago
- Multi-resolution Variational Inference☆22Updated 3 months ago
- ☆34Updated 8 months ago
- A python port of the R package SCTransform:☆19Updated 3 years ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆40Updated last year
- Accelerated, Python-only, single-cell integration benchmarking metrics☆53Updated this week
- TACCO: Transfer of Annotations to Cells and their COmbinations☆44Updated 6 months ago
- ☆47Updated 4 months ago
- Python implementation of the Slingshot pseudotime algorithm☆55Updated 9 months ago
- ☆34Updated 4 months ago
- ☆55Updated 6 years ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆59Updated 2 weeks ago
- Gene group activity utility functions for Scanpy☆67Updated last month
- Analysis of cell-cell communication at single-cell resolution☆100Updated 4 months ago
- Metacells - Single-cell RNA Sequencing Analysis☆101Updated 4 months ago