broadinstitute / mix_seq_msLinks
Code associated with MIX-seq manuscript
☆15Updated 5 years ago
Alternatives and similar repositories for mix_seq_ms
Users that are interested in mix_seq_ms are comparing it to the libraries listed below
Sorting:
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- Trans-association between HLA and TCR-CDR3☆18Updated 2 years ago
- Individual level Differential Expression Analysis for Single cells☆24Updated 2 years ago
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆33Updated this week
- Mean Alterations Using Discrete Expression☆14Updated last year
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆22Updated last year
- ☆17Updated last year
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆28Updated 3 years ago
- Analysis of Single Cell Expression, Normalization and Differential expression☆12Updated 5 years ago
- ☆12Updated 4 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- Single cell interactive plotting tools☆23Updated 5 years ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- Tools for assessing clustering robustness☆25Updated last week
- TRUST4 manuscript evaluation☆15Updated 3 years ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 3 years ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- ☆36Updated last year
- ☆12Updated 4 years ago
- ☆23Updated 3 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆15Updated 2 years ago
- cancereffectsizeR: Estimate somatic mutation rates and quantify selection in cancer☆18Updated last month
- TCR Reconstruction Algorithm for Paired-End Single cell☆14Updated 5 years ago
- Single-cell Scalable Visualization and Analytics☆26Updated 6 years ago
- scover☆23Updated last year
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- ☆12Updated 2 years ago
- Paired-seq☆14Updated last year