broadinstitute / mix_seq_msLinks
Code associated with MIX-seq manuscript
☆15Updated 4 years ago
Alternatives and similar repositories for mix_seq_ms
Users that are interested in mix_seq_ms are comparing it to the libraries listed below
Sorting:
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆33Updated last month
- Individual level Differential Expression Analysis for Single cells☆24Updated 2 years ago
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- 🧭 Navigate single-cell RNA-seq datasets in your web browser.☆29Updated 2 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆21Updated last year
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆28Updated 3 years ago
- ☆17Updated last year
- ☆36Updated last year
- Trans-association between HLA and TCR-CDR3☆18Updated 2 years ago
- RNA velocity validation☆22Updated 3 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- Single cell interactive plotting tools☆23Updated 5 years ago
- ☆12Updated 4 years ago
- scover☆23Updated last year
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆34Updated 3 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- benchmark for single-cell RNA-seq imputation methods☆26Updated last year
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆14Updated 4 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 7 years ago
- Fast motif matching in R☆46Updated last year
- Causal inference, differential expression, and co-expression for scRNA-seq☆18Updated 3 years ago
- GENIE3 (GEne Network Inference with Ensemble of trees) R-package☆33Updated 3 years ago
- Explore the cancer relevance of your gene list☆51Updated 5 months ago
- CiteFuse:☆28Updated 2 years ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆56Updated last year
- Analysis of Single Cell Expression, Normalization and Differential expression☆12Updated 5 years ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 3 years ago