Code associated with MIX-seq manuscript
☆15Aug 26, 2020Updated 5 years ago
Alternatives and similar repositories for mix_seq_ms
Users that are interested in mix_seq_ms are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Apr 16, 2020Updated 5 years ago
- Code and files accompanying article "The landscape of somatic mutation in normal colorectal epithelial cells"☆11Mar 21, 2021Updated 5 years ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Jul 19, 2022Updated 3 years ago
- a guideRNA database generation tool☆18Mar 3, 2025Updated last year
- Custom scripts used in "Spatiotemporal DNA Methylome Dynamics of the Developing Mammalian Fetus"☆11Oct 15, 2020Updated 5 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- IsoTools is a python module for Long Read Transcriptome Sequencing (LRTS) analysis.☆27Oct 6, 2023Updated 2 years ago
- ☆10Dec 4, 2019Updated 6 years ago
- ☆17May 15, 2024Updated last year
- Analysis code for the TAP-seq manuscript.☆11Jun 25, 2021Updated 4 years ago
- HiC-Reg is a tool to predict Hi-C contact counts from one-dimensional regulatory signals☆11Aug 25, 2020Updated 5 years ago
- ☆72Aug 19, 2023Updated 2 years ago
- This repostory contains codes for Shimada et al., "A tool for browsing the Cancer Dependency Map reveals functional connections between g…☆13Sep 3, 2021Updated 4 years ago
- Human Primary T cells: A Practical Guide☆15Sep 18, 2018Updated 7 years ago
- Perform differential expression analysis on cohort-scale single cell datasets using linear mixed models☆21Feb 2, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- ☆12Jul 31, 2025Updated 7 months ago
- Code used for biomarker discovery using party (building conditional random forests)☆15May 18, 2018Updated 7 years ago
- The official repository for the deepSNV bioconductor packages. Branch master tracks the official Bioconductor development branch.☆17Jun 1, 2022Updated 3 years ago
- analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages☆10Jan 30, 2023Updated 3 years ago
- Code used to generate the results in "Somatic chronology of treatment-resistant prostate cancer via deep whole-genome ctDNA sequencing"☆16Mar 11, 2024Updated 2 years ago
- ☆19Oct 27, 2021Updated 4 years ago
- kallisto index tag extractor☆20Jul 6, 2019Updated 6 years ago
- Fast Inference of Networks from Directed Regulations☆22Dec 7, 2023Updated 2 years ago
- Mutation rate analysis of autosomal loci☆15Jun 25, 2020Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- R package to use EaSIeR to predict anti-tumor immune response from bulk RNA-seq☆15Dec 1, 2025Updated 3 months ago
- Snakemake workflow for comparing E-G links to experimental data☆23Mar 9, 2026Updated 2 weeks ago
- Method used in the study on germline mutation rate estimation in 68 species of vertebrates.☆16Oct 11, 2021Updated 4 years ago
- Tutorials for the crisprVerse☆14Feb 10, 2025Updated last year
- ☆16Sep 21, 2021Updated 4 years ago
- Multi-nucleotide variants (MNVs) in gnomAD 2.1☆12Feb 27, 2026Updated 3 weeks ago
- Resources for grounding protein families and complexes from text and describing their hierarchical relationships.☆18Jul 10, 2024Updated last year
- Slides and Notebooks for scverse 2024☆17Sep 24, 2024Updated last year
- renders a KEGGML file and displays a KEGG pathway☆10Jul 14, 2016Updated 9 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Code repository for the snRNA-seq cross-tissue atlas project☆21Feb 22, 2022Updated 4 years ago
- Bioinformatics analysis scripts, workflows, general code examples☆55Feb 19, 2021Updated 5 years ago
- Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…☆24Apr 25, 2023Updated 2 years ago
- GenoCraft: A Comprehensive, User-Friendly Web Platform for High-Throughput Omics Data Analysis and Visualization (https://arxiv.org/pdf/2…☆19May 28, 2025Updated 9 months ago
- Analyzing chromatin accessibility data in R☆18Jun 23, 2023Updated 2 years ago
- A unified downloader+preprocessor for cancer genomics datasets☆16Apr 7, 2024Updated last year
- tumor - cancer cell line alignment. Use it on the depmap portal or install it with pip.☆11Dec 5, 2023Updated 2 years ago