hms-dbmi / cistrome-explorerView external linksLinks
Interactive visual analytic tool for exploring epigenomics data w/ associated metadata, powered by HiGlass and Gosling
☆13Nov 10, 2023Updated 2 years ago
Alternatives and similar repositories for cistrome-explorer
Users that are interested in cistrome-explorer are comparing it to the libraries listed below
Sorting:
- Prototype your Jupyter Widget in the browser with anywidget and JupyterLite 💡☆16Apr 7, 2025Updated 10 months ago
- Agglomerative hierarchical clustering in JavaScript☆19Dec 17, 2024Updated last year
- A web-based, time-series visualizer for tracked segmented data.☆13Feb 10, 2026Updated last week
- ☆11Updated this week
- Visualize genomic data using webgl and webworkers, in an effort to provide a fluid, high-performance user experience.☆11May 24, 2024Updated last year
- Simple Jupyter chat UI for LangChain☆11Jul 3, 2024Updated last year
- Read FASTA files indexed with .fai indexes. Also supports BGZIP+.gzi☆12Jan 8, 2026Updated last month
- Read Tabix-indexed files, either with .tbi or .csi indexes, in node or the browser☆14Dec 24, 2025Updated last month
- Genomic Visualization Catalog☆13Oct 6, 2022Updated 3 years ago
- Interface to the Bioformats Java library☆13Updated this week
- Jupyter Notebooks and other code for Altair-based Interactive UpSet Plots☆31Dec 1, 2021Updated 4 years ago
- 2D Hilbert curve mapping in JavaScript☆16Jan 4, 2023Updated 3 years ago
- A web file browser for managing data on remote jupyter servers.☆15Feb 6, 2024Updated 2 years ago
- ☆14Mar 14, 2024Updated last year
- Tools for DLO HiC data analyze☆16Oct 31, 2022Updated 3 years ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Sep 26, 2024Updated last year
- Python bindings to UCSC BigWig and BigBed library☆35Jan 28, 2026Updated 2 weeks ago
- serve Zarr datasets via HTTP☆31Jun 12, 2023Updated 2 years ago
- Python bindings for hictk: read and write .cool and .hic files directly from Python☆16Feb 2, 2026Updated 2 weeks ago
- Genomics 3D Visualizer☆14Jun 14, 2024Updated last year
- Blazing fast toolkit to work with .hic and .cool files☆42Feb 9, 2026Updated last week
- 📐👁️ React hooks for building responsive and adaptable web interfaces☆37Oct 13, 2025Updated 4 months ago
- R API and htmlwidget for Vitessce☆44Aug 13, 2025Updated 6 months ago
- python implementation of the PAGE algorithm☆20Updated this week
- Scalable Insets for HiGlass: a new technique for interactively exploring and navigating large numbers of annotated patterns in multiscale…☆16Dec 8, 2022Updated 3 years ago
- Spatial omics analysis and visualization library☆22Feb 3, 2026Updated 2 weeks ago
- Edit and explore Mosaic visualizations (real-time interaction for big datasets) in your browser☆21Oct 31, 2025Updated 3 months ago
- s3 driver for hdf5 1.8 and 1.10☆17Jun 25, 2019Updated 6 years ago
- Declarative Machine Learning and Visual Analytics☆18Jan 6, 2023Updated 3 years ago
- SIP: Significant Interaction Peak caller☆15Apr 24, 2025Updated 9 months ago
- Data and the co-authored network I extracted for lab selection in 3D genome research field☆16Dec 26, 2021Updated 4 years ago
- Python reimplementation of hicrep with compatibility for sparse matrices☆18Dec 18, 2022Updated 3 years ago
- Compile optimized Vega and Vega-Lite bundles.☆18Apr 13, 2021Updated 4 years ago
- An Apache Arrow-backed file format for pre-projected, pre-triangulated maps, including dot density algorithms and regl visualization.☆18Feb 10, 2023Updated 3 years ago
- SELFISH is a tool for finding differential chromatin interactions between two Hi-C contact maps.☆17Jun 1, 2023Updated 2 years ago
- A web application from the Raphael Lab for mutation annotation and genome interpretation.☆20Feb 16, 2018Updated 8 years ago
- High performance WebGL genome visualization☆15Oct 22, 2021Updated 4 years ago
- HiC for copy Number variation and Translocation detection☆41Aug 4, 2021Updated 4 years ago
- Tissue reassembly with generative AI☆24May 22, 2025Updated 8 months ago