Alternatives and similar repositories for cistrome-explorer

Users that are interested in cistrome-explorer are comparing it to the libraries listed below

• higlass / clodius
  Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.
  ☆39Updated 5 months ago
• JEFworks-Lab / MERmaid
  WebGL-based viewer for spatially-resolved transcriptomics data
  ☆28Updated 2 years ago
• higlass / higlass-python
  Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer
  ☆60Updated 2 weeks ago
• manzt / pygv
  a minimal, scriptable genome browser for python
  ☆51Updated 10 months ago
• meuleman / epilogos
  Methods for summarizing and visualizing multi-biosample functional genomic annotations
  ☆46Updated 7 months ago
• VALIS-software / valis-hpgv
  High performance WebGL genome visualization
  ☆15Updated 4 years ago
• PouletAxel / SIP
  SIP: Significant Interaction Peak caller
  ☆15Updated 6 months ago
• vector-engineering / covidcg
  A COVID-19 CoV Genetics (CG) browser to inform therapeutics development
  ☆26Updated last week
• GMOD / tabix-js
  Read Tabix-indexed files, either with .tbi or .csi indexes, in node or the browser
  ☆14Updated 2 weeks ago
• billgreenwald / pgltools
  Paired Genomic Loci Tool Suite
  ☆32Updated 2 years ago
• goodarzilab / pypage
  python implementation of the PAGE algorithm
  ☆18Updated last year
• marcos-diazg / musica
  MuSiCa - Mutational Signatures in Cancer
  ☆23Updated last year
• kanaverse / scran.js
  Single cell analysis in Javascript
  ☆22Updated 2 months ago
• jhrf / telomerecat
  Telomerecat: The telomere computational analysis tool
  ☆14Updated 5 years ago
• ArcInstitute / scRecounter
  Nextflow pipeline to re-process all public single-cell RNA-seq data
  ☆30Updated 3 months ago
• Oshlack / Slinker
  Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.
  ☆19Updated 3 years ago
• cmdoret / hicreppy
  Python reimplementation of hicrep with compatibility for sparse matrices
  ☆18Updated 2 years ago
• vitessce / vitessceR
  R API and htmlwidget for Vitessce
  ☆43Updated 2 months ago
• stjude / proteinpaint
  Data visualization and analysis framework focused on phenotype-molecular data integration at cohort level.
  ☆35Updated this week
• gtrichard / deepStats
  deepStats: a stastitical toolbox for deeptools and genomic signals
  ☆34Updated 4 years ago
• GMOD / jbrowse-jupyter
  A python package for showing JBrowse views
  ☆26Updated last year
• slowkow / cellguide
  🧭 Navigate single-cell RNA-seq datasets in your web browser.
  ☆29Updated 2 years ago
• ay-lab / selfish
  SELFISH is a tool for finding differential chromatin interactions between two Hi-C contact maps.
  ☆17Updated 2 years ago
• GMOD / indexedfasta-js
  Read FASTA files indexed with .fai indexes. Also supports BGZIP+.gzi
  ☆12Updated last week
• BiocPy / GenomicRanges
  Container class to represent genomic locations and support genomic analysis
  ☆25Updated last week
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆42Updated 3 years ago
• nvictus / pybbi
  Python bindings to UCSC BigWig and BigBed library
  ☆35Updated 6 months ago
• COMBINE-lab / pyroe
  ☆16Updated 9 months ago
• ncbi / scPopCorn
  A python tool to do comparative analysis of mulitple single cell datasets.
  ☆21Updated 6 years ago
• bioturing / hera-t
  Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol
  ☆18Updated 3 years ago