kharchenkolab / pagoda2Links
R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets
☆231Updated last year
Alternatives and similar repositories for pagoda2
Users that are interested in pagoda2 are comparing it to the libraries listed below
Sorting:
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆279Updated 2 years ago
- Interactively analyze single cell genomic data☆182Updated last month
- Methods for detecting doublets in single-cell sequencing data☆196Updated 3 months ago
- LIANA: a LIgand-receptor ANalysis frAmework☆208Updated 10 months ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆162Updated last year
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆227Updated 2 years ago
- Multi-sample multi-group scRNA-seq analysis tools☆194Updated last month
- Signature Analysis and Visualization for Single-Cell RNA-seq☆168Updated last year
- chromatin Variability Across Regions (of the genome!)☆178Updated 11 months ago
- SingleCellNet: classify single cells across species and platforms☆137Updated last year
- Clone of the Bioconductor repository for the SingleR package.☆191Updated 2 weeks ago
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆198Updated 3 weeks ago
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆121Updated 2 years ago
- Interpretation of cell states using reference single-cell maps☆278Updated last month
- A Bayesian model for compositional single-cell data analysis☆165Updated 2 years ago
- reticulate-free single cell format conversion☆158Updated 6 months ago
- Gene set scoring for single-cell data