Alternatives and similar repositories for dictys:

Users that are interested in dictys are comparing it to the libraries listed below

• theislab / scib-pipeline
  Snakemake pipeline that works with the scIB package to benchmark data integration methods.
  ☆68Updated last month
• jackbibby1 / SCPA
  R package for pathway analysis in scRNA-seq data
  ☆70Updated 6 months ago
• emdann / milopy
  Python implementation of Milo for differential abundance testing on KNN graph
  ☆63Updated 3 weeks ago
• aertslab / pycisTopic
  pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.
  ☆64Updated this week
• KlugerLab / ALRA
  Imputation method for scRNA-seq based on low-rank approximation
  ☆74Updated last year
• aertslab / arboreto
  A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.
  ☆56Updated 11 months ago
• flatironinstitute / inferelator
  Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.
  ☆48Updated 8 months ago
• martinjzhang / scDRS
  Single-cell disease relevance score (scDRS)
  ☆121Updated 4 months ago
• tanaylab / metacells
  Metacells - Single-cell RNA Sequencing Analysis
  ☆101Updated 5 months ago
• theislab / scCODA
  A Bayesian model for compositional single-cell data analysis
  ☆158Updated last year
• theislab / AutoGeneS
  ☆59Updated 3 years ago
• abelson-lab / scATOMIC
  Pan-Cancer Single Cell Classifier
  ☆66Updated 9 months ago
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆61Updated 10 months ago
• quadbio / Pando
  Multiome GRN inference.
  ☆119Updated 10 months ago
• RausellLab / CelliD
  Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.
  ☆93Updated last year
• ShobiStassen / VIA
  trajectory inference
  ☆96Updated last month
• carmonalab / scGate
  marker-based purification of cell types from single-cell RNA-seq datasets
  ☆106Updated last month
• BayraktarLab / cell2fate
  Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.
  ☆59Updated 6 months ago
• timoast / sinto
  Tools for single-cell data processing
  ☆122Updated 9 months ago
• GfellerLab / SuperCell
  Coarse-graining of large single-cell RNA-seq data into metacells
  ☆73Updated 6 months ago
• welch-lab / MultiVelo
  Multi-omic velocity inference
  ☆109Updated 4 months ago
• crazyhottommy / scclusteval
  Single Cell Cluster Evaluation
  ☆92Updated 3 years ago
• CahanLab / singleCellNet
  SingleCellNet: classify single cells across species and platforms
  ☆135Updated last year
• SCCAF / sccaf
  Single-Cell Clustering Assessment Framework
  ☆99Updated last year
• earmingol / cell2cell
  User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
  ☆59Updated 8 months ago
• Teichlab / bbknn
  Batch balanced KNN
  ☆153Updated last year
• aertslab / AUCell
  AUCell: score single cells with gene regulatory networks
  ☆145Updated last year
• immunogenomics / symphony
  Efficient and precise single-cell reference atlas mapping with Symphony
  ☆103Updated 2 years ago
• brianhie / geosketch
  Geometry-preserving random sampling
  ☆80Updated 4 months ago
• immunogenomics / LISI
  Methods to compute Local Inverse Simpson's Index (LISI)
  ☆61Updated 3 years ago