pinellolab / dictysLinks
Context specific and dynamic gene regulatory network reconstruction and analysis
☆119Updated this week
Alternatives and similar repositories for dictys
Users that are interested in dictys are comparing it to the libraries listed below
Sorting:
- Imputation method for scRNA-seq based on low-rank approximation☆78Updated last year
- Metacells - Single-cell RNA Sequencing Analysis☆108Updated 9 months ago
- Python implementation of Milo for differential abundance testing on KNN graph☆72Updated 4 months ago
- Single-Cell Clustering Assessment Framework☆103Updated last year
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆68Updated this week
- Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.☆50Updated last year
- Multiome GRN inference.☆124Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆84Updated last month
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆63Updated this week
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆61Updated last year
- Geometry-preserving random sampling☆87Updated 8 months ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆74Updated 5 months ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆77Updated 3 months ago
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆59Updated last year
- R package to access DoRothEA's regulons☆149Updated last year
- Multi-omic velocity inference☆110Updated 8 months ago
- trajectory inference☆104Updated 5 months ago
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆63Updated 2 weeks ago
- ☆61Updated 4 years ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆113Updated last year
- scPred package for cell type prediction from scRNA-seq data☆89Updated last year
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆61Updated last week
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆83Updated 10 months ago
- SingleCellNet: classify single cells across species and platforms☆137Updated last year
- R package for pathway analysis in scRNA-seq data☆75Updated 10 months ago
- Unified access to several second-generation deconvolution methods☆73Updated this week
- Convert between AnnData and SingleCellExperiment☆137Updated this week
- Single cell omics biology annotations☆51Updated 2 months ago
- Capybara: A computational tool to measure cell identity and fate transitions☆59Updated 3 years ago
- Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with mill…☆100Updated 2 months ago