Context specific and dynamic gene regulatory network reconstruction and analysis
☆128Jun 22, 2026Updated last week
Alternatives and similar repositories for dictys
Users that are interested in dictys are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆260Jan 16, 2026Updated 5 months ago
- Multi-omic velocity inference☆119Oct 23, 2024Updated last year
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆31Oct 24, 2024Updated last year
- This is the alpha version of the CellOracle package☆470Apr 30, 2026Updated 2 months ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆192Mar 27, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Functional Inference of Gene Regulation☆54Jul 5, 2024Updated last year
- Regulatory networks with Direct Information in python☆41Mar 9, 2023Updated 3 years ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Feb 19, 2026Updated 4 months ago
- Multiome GRN inference.☆137Apr 10, 2026Updated 2 months ago
- Toolkit for metacell analysis☆24Aug 8, 2024Updated last year
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆68Jul 8, 2025Updated 11 months ago
- A deep model infers gene regulation networks from scRNA-seq data.☆12Aug 1, 2024Updated last year
- A python package for chromVAR☆34May 1, 2023Updated 3 years ago
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆503Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆198Jan 30, 2026Updated 5 months ago
- machine-readable file format for genomic library sequence and structure☆130Jun 19, 2026Updated last week
- Single-cell perturbation analysis☆334Updated this week
- Analysis of cell-cell communication at single-cell resolution☆107Sep 10, 2024Updated last year
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆70May 7, 2026Updated last month
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆83Jul 25, 2025Updated 11 months ago
- ☆130Jun 23, 2026Updated last week
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆47Sep 3, 2025Updated 9 months ago
- A package to help convert different single-cell data formats to each other☆470Feb 20, 2026Updated 4 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Aligning gene expression trajectories of single-cell reference and query systems☆89Aug 10, 2025Updated 10 months ago
- CellRank: dynamics from multi-view single-cell data☆453Jun 24, 2026Updated last week
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆87Apr 21, 2025Updated last year
- ☆43Jan 12, 2026Updated 5 months ago
- Single cell omics biology annotations☆60Jun 5, 2026Updated 3 weeks ago
- LIANA: a LIgand-receptor ANalysis frAmework☆243Aug 7, 2024Updated last year
- Reference mapping for single-cell genomics☆406Updated this week
- An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)☆39Aug 22, 2024Updated last year
- trajectory inference☆109Jan 27, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- R package implementation of Milo for testing for differential abundance in KNN graphs☆436May 11, 2026Updated last month
- ☆151Mar 20, 2026Updated 3 months ago
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆37Apr 2, 2025Updated last year
- ☆68Apr 22, 2026Updated 2 months ago
- Custom codes accompanying single cell spatial transcriptomic study on the healthy human lung☆15Dec 27, 2023Updated 2 years ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆26Jan 11, 2023Updated 3 years ago
- Molecular interactions inference from single-cell multi-omics data☆31May 7, 2026Updated last month