Alternatives and similar repositories for dictys:

Users that are interested in dictys are comparing it to the libraries listed below

• ShobiStassen / VIA
  trajectory inference
  ☆97Updated 3 months ago
• flatironinstitute / inferelator
  Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.
  ☆49Updated 9 months ago
• tanaylab / metacells
  Metacells - Single-cell RNA Sequencing Analysis
  ☆104Updated 7 months ago
• theislab / scib-pipeline
  Snakemake pipeline that works with the scIB package to benchmark data integration methods.
  ☆71Updated 3 months ago
• aertslab / arboreto
  A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.
  ☆58Updated last year
• aertslab / pycisTopic
  pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.
  ☆68Updated 3 weeks ago
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆61Updated last year
• emdann / milopy
  Python implementation of Milo for differential abundance testing on KNN graph
  ☆68Updated 2 months ago
• theislab / AutoGeneS
  ☆59Updated 3 years ago
• jackbibby1 / SCPA
  R package for pathway analysis in scRNA-seq data
  ☆73Updated 8 months ago
• welch-lab / MultiVelo
  Multi-omic velocity inference
  ☆110Updated 6 months ago
• abelson-lab / scATOMIC
  Pan-Cancer Single Cell Classifier
  ☆68Updated 11 months ago
• saezlab / dorothea
  R package to access DoRothEA's regulons
  ☆144Updated last year
• brianhie / geosketch
  Geometry-preserving random sampling
  ☆81Updated 6 months ago
• quadbio / Pando
  Multiome GRN inference.
  ☆121Updated last year
• carmonalab / scGate
  marker-based purification of cell types from single-cell RNA-seq datasets
  ☆110Updated last week
• KlugerLab / ALRA
  Imputation method for scRNA-seq based on low-rank approximation
  ☆74Updated last year
• SCCAF / sccaf
  Single-Cell Clustering Assessment Framework
  ☆101Updated last year
• immunogenomics / symphony
  Efficient and precise single-cell reference atlas mapping with Symphony
  ☆104Updated 2 years ago
• atarashansky / SAMap
  SAMap: Mapping single-cell RNA sequencing datasets from evolutionarily distant organisms.
  ☆74Updated last year
• RausellLab / CelliD
  Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.
  ☆94Updated last year
• timoast / sinto
  Tools for single-cell data processing
  ☆124Updated 11 months ago
• BlishLab / scriabin
  Analysis of cell-cell communication at single-cell resolution
  ☆100Updated 7 months ago
• martinjzhang / scDRS
  Single-cell disease relevance score (scDRS)
  ☆127Updated 6 months ago
• BayraktarLab / cell2fate
  Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.
  ☆73Updated last month
• theislab / scCODA
  A Bayesian model for compositional single-cell data analysis
  ☆163Updated 2 years ago
• carmonalab / STACAS
  R package for semi-supervised single-cell data integration
  ☆81Updated last month
• GfellerLab / SuperCell
  Coarse-graining of large single-cell RNA-seq data into metacells
  ☆77Updated 8 months ago
• livnatje / DIALOGUE
  DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…
  ☆110Updated last year
• digitalcytometry / cytospace
  CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data
  ☆126Updated 2 months ago