pinellolab / dictysLinks
Context specific and dynamic gene regulatory network reconstruction and analysis
☆122Updated last week
Alternatives and similar repositories for dictys
Users that are interested in dictys are comparing it to the libraries listed below
Sorting:
- Single-Cell Clustering Assessment Framework☆105Updated last year
- Multi-omic velocity inference☆110Updated 10 months ago
- trajectory inference☆104Updated 7 months ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆74Updated last month
- Python implementation of Milo for differential abundance testing on KNN graph☆74Updated 6 months ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆79Updated 5 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆64Updated last week
- Analysis of cell-cell communication at single-cell resolution☆104Updated last year
- Direct estimation of mean and covariance from single cell RNA seq experiments☆116Updated 4 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆64Updated 2 months ago
- R implementation of GeneTrajectory☆63Updated last year
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆76Updated 7 months ago
- Metacells - Single-cell RNA Sequencing Analysis☆111Updated 11 months ago
- ☆131Updated last year
- ☆80Updated this week
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆87Updated 3 months ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆68Updated 4 years ago
- A tool for semi-automatic cell type harmonization and integration☆110Updated 5 months ago
- Convert between AnnData and SingleCellExperiment☆138Updated last week
- Single cell omics biology annotations☆51Updated 4 months ago
- Functional Inference of Gene Regulation☆46Updated last year
- ☆58Updated 2 months ago
- Predict RNA velocity through deep learning☆70Updated last year
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆130Updated last year
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆167Updated 5 months ago
- Gene group activity utility functions for Scanpy☆87Updated 8 months ago
- A Bayesian model for compositional single-cell data analysis☆173Updated 2 years ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆61Updated last year
- ☆125Updated 3 years ago