Alternatives and similar repositories for clustergrammer2-notebooks

Users that are interested in clustergrammer2-notebooks are comparing it to the libraries listed below

• flo-compbio / monet
  Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces
  ☆39Updated 3 years ago
• ismms-himc / clustergrammer2
  "Dimensionality-increasing" data visualization tool and interactive WebGL Jupyter widget built for single-cell data.
  ☆116Updated 2 years ago
• theislab / batchglm
  Fit generalized linear models in python.
  ☆28Updated 2 years ago
• KlugerLab / t-SNE-Heatmaps
  Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq
  ☆48Updated 6 years ago
• greenelab / multi-plier
  An unsupervised transfer learning approach for rare disease transcriptomics
  ☆45Updated 5 years ago
• broadinstitute / genepy
  Genepy is an open source utils package covering a range of useful functions for large scale genomics data analysis in python
  ☆21Updated 2 years ago
• lmweber / diffcyt
  R package for differential discovery analyses in high-dimensional cytometry data
  ☆20Updated 5 months ago
• pachterlab / picasso
  Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.
  ☆70Updated last year
• ismms-himc / visium-clustergrammer2
  Spatial Transcriptomics Dashboard
  ☆27Updated 2 years ago
• willtownes / glmpca-py
  generalized principal component analysis (GLM-PCA) implemented in python
  ☆60Updated 4 years ago
• ismms-himc / codex_dashboard
  Single Cell Multiplexed Imaging Jupyter Voila Dashboard using CODEX Data
  ☆17Updated 2 years ago
• vals / python-gprofiler
  ☆12Updated 6 years ago
• BIRSBiointegration / Hackathon
  Multi-omics studies are available here
  ☆51Updated 3 years ago
• RGLab / FAUST
  Full annotation using shape-constrained trees
  ☆25Updated last year
• BIMSBbioinfo / netSmooth
  netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation
  ☆27Updated last year
• dkobak / finer-tsne
  Code for the paper on t-SNE with variable degree of freedom
  ☆24Updated 4 years ago
• HumanCellAtlas / table-testing
  requirements, examples, and tests for expression matrix file formats
  ☆22Updated 6 years ago
• dawe / schist
  An interface for Nested Stochastic Block Model for single cell analysis
  ☆35Updated last week
• biolab / orange3-single-cell
  🍊🔬 Orange add-on for gene expression of single cell data
  ☆17Updated 2 months ago
• berenslab / umi-normalization
  Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…
  ☆40Updated 3 years ago
• lkmklsmn / insct
  scRNAseq integration with triplet neural networks
  ☆41Updated 2 years ago
• vals / Blog
  ☆37Updated last week
• shwhalen / ml-pitfalls
  Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"
  ☆45Updated last year
• drisso / zinbwave
  Clone of the Bioconductor repository for the zinbwave package, see https://bioconductor.org/packages/zinbwave
  ☆44Updated last year
• kundajelab / gkmexplain
  Accompanying repository for GkmExplain paper
  ☆22Updated 4 years ago
• nolanlab / vortex
  VorteX Clustering Environment - Java graphical tool for single-cell analysis, clustering and visualization. Latest release:
  ☆34Updated 2 years ago
• BIMSBbioinfo / maui
  Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit
  ☆49Updated 2 years ago
• ccshao / nimfa
  nimfa - A Python Library for Nonnegative Matrix Factorization Techniques
  ☆10Updated 6 years ago
• mararie / lionessR
  Single sample network reconstruction in R
  ☆22Updated 5 years ago
• JEFworks-Lab / MERmaid
  WebGL-based viewer for spatially-resolved transcriptomics data
  ☆28Updated 2 years ago