Alternatives and similar repositories for clustergrammer2-notebooks:

Users that are interested in clustergrammer2-notebooks are comparing it to the libraries listed below

• flo-compbio / monet
  Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces
  ☆39Updated 3 years ago
• ismms-himc / codex_dashboard
  Single Cell Multiplexed Imaging Jupyter Voila Dashboard using CODEX Data
  ☆16Updated last year
• Teichlab / covid19_MS1
  Analysis notebooks for "SARS-CoV-2 entry factors are highly expressed in nasal epithelial cells together with innate immune genes".
  ☆14Updated 4 years ago
• KlugerLab / t-SNE-Heatmaps
  Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq
  ☆48Updated 6 years ago
• greenelab / multi-plier
  An unsupervised transfer learning approach for rare disease transcriptomics
  ☆45Updated 5 years ago
• lmweber / diffcyt
  R package for differential discovery analyses in high-dimensional cytometry data
  ☆20Updated last month
• ismms-himc / clustergrammer2
  "Dimensionality-increasing" data visualization tool and interactive WebGL Jupyter widget built for single-cell data.
  ☆114Updated 2 years ago
• theislab / batchglm
  Fit generalized linear models in python.
  ☆27Updated 2 years ago
• NikolayOskolkov / NormalizeSingleCell
  Comparison of single cell normalization strategies
  ☆10Updated 3 years ago
• yjzhang / uncurl_python
  UNCURL is a tool for single cell RNA-seq data analysis.
  ☆15Updated 2 years ago
• genepattern / genepattern-notebook
  Platform for integrating genomic analysis with Jupyter Notebooks.
  ☆44Updated 7 months ago
• BIRSBiointegration / Hackathon
  Multi-omics studies are available here
  ☆51Updated 2 years ago
• ismms-himc / visium-clustergrammer2
  Spatial Transcriptomics Dashboard
  ☆28Updated last year
• broadinstitute / genepy
  Genepy is an open source utils package covering a range of useful functions for large scale genomics data analysis in python
  ☆20Updated last year
• lkmklsmn / insct
  scRNAseq integration with triplet neural networks
  ☆40Updated 2 years ago
• HumanCellAtlas / table-testing
  requirements, examples, and tests for expression matrix file formats
  ☆22Updated 6 years ago
• BIMSBbioinfo / netSmooth
  netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation
  ☆27Updated 10 months ago
• cole-trapnell-lab / cicero
  ☆12Updated last year
• KrishnaswamyLab / Multiscale_PHATE
  Creating multi-resolution embeddings and clusters from high dimensional data
  ☆52Updated 5 months ago
• quon-titative-biology / scAlign
  A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…
  ☆37Updated 3 years ago
• JEFworks-Lab / MERmaid
  WebGL-based viewer for spatially-resolved transcriptomics data
  ☆26Updated 2 years ago
• czbiohub-sf / cerebra
  A tool for fast and accurate summarizing of variant calling format (VCF) files
  ☆60Updated 2 years ago
• NikolayOskolkov / DeepLearningSingleCellBiology
  Here I show how to use Deep Autoencoders for single cell RNA sequencing data analysis
  ☆19Updated 5 years ago
• lasersonlab / single-cell-experiments
  Experiments to run single cell analyses efficiently at scale using Zarr, anndata, Scanpy, and Apache Spark
  ☆14Updated 5 years ago
• biolab / orange3-single-cell
  🍊🔬 Orange add-on for gene expression of single cell data
  ☆17Updated 8 months ago
• TaylorResearchLab / scedar
  Single-cell exploratory data analysis for RNA-Seq
  ☆40Updated 3 years ago
• KlugerLab / deepcytof
  ☆18Updated 8 years ago
• MaayanLab / biojupies-plugins
  User-submitted RNA-seq data analysis tools for BioJupies.
  ☆19Updated 3 years ago
• loosolab / UROPA
  Universal RObust Peak Annotator
  ☆15Updated last year
• mruffalo / sc-rna-seq-pipeline
  ☆23Updated 5 years ago