Alternatives and similar repositories for clustergrammer2-notebooks:

Users that are interested in clustergrammer2-notebooks are comparing it to the libraries listed below

• flo-compbio / monet
  Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces
  ☆39Updated 3 years ago
• ismms-himc / visium-clustergrammer2
  Spatial Transcriptomics Dashboard
  ☆28Updated last year
• greenelab / multi-plier
  An unsupervised transfer learning approach for rare disease transcriptomics
  ☆45Updated 5 years ago
• ismms-himc / codex_dashboard
  Single Cell Multiplexed Imaging Jupyter Voila Dashboard using CODEX Data
  ☆16Updated last year
• ismms-himc / clustergrammer2
  "Dimensionality-increasing" data visualization tool and interactive WebGL Jupyter widget built for single-cell data.
  ☆115Updated 2 years ago
• willtownes / glmpca-py
  generalized principal component analysis (GLM-PCA) implemented in python
  ☆58Updated 4 years ago
• theislab / batchglm
  Fit generalized linear models in python.
  ☆27Updated last year
• NikolayOskolkov / NormalizeSingleCell
  Comparison of single cell normalization strategies
  ☆10Updated 3 years ago
• HumanCellAtlas / table-testing
  requirements, examples, and tests for expression matrix file formats
  ☆22Updated 6 years ago
• cole-trapnell-lab / cicero
  ☆12Updated last year
• aristoteleo / Scribe-py
  Regulatory networks with Direct Information in python
  ☆40Updated last year
• Teichlab / covid19_MS1
  Analysis notebooks for "SARS-CoV-2 entry factors are highly expressed in nasal epithelial cells together with innate immune genes".
  ☆14Updated 4 years ago
• KrishnaswamyLab / Multiscale_PHATE
  Creating multi-resolution embeddings and clusters from high dimensional data
  ☆51Updated 4 months ago
• biolab / orange3-single-cell
  🍊🔬 Orange add-on for gene expression of single cell data
  ☆17Updated 7 months ago
• BIMSBbioinfo / flexynesis
  A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner
  ☆31Updated this week
• gmiaslab / pyiomica
  PyIOmica (pyiomica) is a Python package for omics analyses.
  ☆15Updated 2 years ago
• lkmklsmn / insct
  scRNAseq integration with triplet neural networks
  ☆40Updated 2 years ago
• vals / python-gprofiler
  ☆12Updated 6 years ago
• BIMSBbioinfo / netSmooth
  netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation
  ☆27Updated 9 months ago
• lmweber / diffcyt
  R package for differential discovery analyses in high-dimensional cytometry data
  ☆19Updated last week
• loosolab / UROPA
  Universal RObust Peak Annotator
  ☆15Updated last year
• BIRSBiointegration / Hackathon
  Multi-omics studies are available here
  ☆51Updated 2 years ago
• KenLauLab / dropkick
  Automated cell filtering for single-cell RNA sequencing data
  ☆24Updated last year
• pachterlab / picasso
  Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.
  ☆70Updated 7 months ago
• Teichlab / MultiMAP
  MultiMAP for integration of single cell multi-omics
  ☆54Updated last year
• KlugerLab / t-SNE-Heatmaps
  Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq
  ☆48Updated 6 years ago
• bioturing / hera-t
  Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol
  ☆17Updated 3 years ago
• KlugerLab / pyFIt-SNE
  Python Wrapper for FIt-SNE
  ☆45Updated 3 years ago
• cantinilab / Mowgli
  Single-cell multi-omics integration using Optimal Transport
  ☆41Updated 5 months ago
• TaylorResearchLab / scedar
  Single-cell exploratory data analysis for RNA-Seq
  ☆40Updated 3 years ago