Comparison of Hi-C Experiments using Structural Similarity.
☆28Jul 18, 2023Updated 2 years ago
Alternatives and similar repositories for chess
Users that are interested in chess are comparing it to the libraries listed below
Sorting:
- FAN-C: Framework for the ANalysis of C-like data☆122Mar 13, 2024Updated 2 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆23Mar 30, 2024Updated last year
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆41Jan 31, 2024Updated 2 years ago
- Software for comparing contact maps from HiC, CaptureC and other 3D genome data.☆26May 21, 2018Updated 7 years ago
- Python reimplementation of hicrep with compatibility for sparse matrices☆19Dec 18, 2022Updated 3 years ago
- Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps☆70Dec 16, 2022Updated 3 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆49Nov 16, 2022Updated 3 years ago
- SELFISH is a tool for finding differential chromatin interactions between two Hi-C contact maps.☆17Jun 1, 2023Updated 2 years ago
- ☆22Aug 11, 2020Updated 5 years ago
- Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation☆80Jan 24, 2025Updated last year
- ☆18Nov 9, 2020Updated 5 years ago
- ☆16Jul 21, 2022Updated 3 years ago
- nuclear compartments, subcompartments, nuclear organization, Hi-C, autoencoder☆29Jul 5, 2024Updated last year
- SIP: Significant Interaction Peak caller☆16Apr 24, 2025Updated 10 months ago
- 1D/2D indexing and querying on bgzipped text file with a pair of genomic coordinates☆92Jan 28, 2025Updated last year
- A toolkit for analyzing architectural stripes☆20Dec 1, 2024Updated last year
- HiC for copy Number variation and Translocation detection☆41Aug 4, 2021Updated 4 years ago
- GENome Organisation Visual Analytics☆86Feb 3, 2026Updated last month
- Software to compute reproducibility and quality scores for Hi-C data☆50Apr 12, 2019Updated 6 years ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆74Jan 10, 2024Updated 2 years ago
- ☆22May 26, 2020Updated 5 years ago
- Particle dynamics and simulated annealing for chromosome structure calculation☆28Mar 15, 2024Updated 2 years ago
- A versatile tool to perform pile-up analysis on Hi-C data in .cool format.☆81Oct 31, 2024Updated last year
- A cool place to store your Hi-C☆231Updated this week
- A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps☆61Aug 28, 2025Updated 6 months ago
- code associated with crane-nature-2015, 10.1038/nature14450☆36Aug 28, 2015Updated 10 years ago
- A Python implementation for BH-FDR and HiCCUPS☆54Dec 29, 2025Updated 2 months ago
- Scripts + resources for analyzing combinatorial Hi-C data☆32Nov 5, 2019Updated 6 years ago
- Simple codes and lines to process 3C/Hi-C data☆18Oct 21, 2021Updated 4 years ago
- iFISH Probe Design: a Python3 package to build iFISH probes.☆12Mar 11, 2022Updated 4 years ago
- ☆52Mar 17, 2023Updated 3 years ago
- A collection of tools for Hi-C data analysis☆633Mar 15, 2026Updated last week
- ☆15Sep 27, 2022Updated 3 years ago
- QC report generator for Hi-C pairs file☆13Sep 14, 2020Updated 5 years ago
- The tools for your .cool's☆161Jul 7, 2025Updated 8 months ago
- scripts used to analyse horizontal transfer and evolution of transposable elements in 307 vertebrate species☆11May 16, 2021Updated 4 years ago
- Lightweight converter between hic and cool contact matrices.☆75Jul 15, 2024Updated last year
- Data and the co-authored network I extracted for lab selection in 3D genome research field☆16Dec 26, 2021Updated 4 years ago
- Integrated Genome Modeling (IGM): multi-modal data-driven simulator of genome structures☆12Jun 15, 2023Updated 2 years ago