vaquerizaslab / chessLinks
Comparison of Hi-C Experiments using Structural Similarity.
☆28Updated 2 years ago
Alternatives and similar repositories for chess
Users that are interested in chess are comparing it to the libraries listed below
Sorting:
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆41Updated 2 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆45Updated 3 years ago
- Single-cell Hi-C data analysis toolbox☆27Updated 4 years ago
- Blazing fast toolkit to work with .hic and .cool files☆42Updated last week
- HiC for copy Number variation and Translocation detection☆41Updated 4 years ago
- Python reimplementation of hicrep with compatibility for sparse matrices☆18Updated 3 years ago
- snakemake pipeline for Hi-C post-processing☆22Updated last year
- Python library for processing and visualizing Hi-C data☆20Updated 5 years ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated 2 years ago
- An Optimized Nested TAD caller for Hi-C data☆25Updated 4 years ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆42Updated 3 months ago
- R package to evaluate the reproducibility of Hi-C data☆27Updated 2 years ago
- Architectural stripe detection from 3D genome conformation data☆18Updated 4 months ago
- A Python library to visualize and analyze long-read transcriptomes☆65Updated 2 weeks ago
- FreeHi-C pipeline for high fidelity Hi-C data simulation.☆12Updated 4 years ago
- A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps☆61Updated 5 months ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆74Updated 2 years ago
- IDR☆30Updated 2 years ago
- ☆22Updated 5 years ago
- chia pet analysis software☆25Updated 7 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆23Updated last year
- Genome Contact Map Explorer - gcMapExplorer. Visit:☆21Updated 4 years ago
- SingleCell Nanopore sequencing data analysis☆63Updated 8 months ago
- A Python implementation for BH-FDR and HiCCUPS☆53Updated last month
- ☆37Updated 6 years ago
- HiCorr: a Hi-C data bias-correction pipeline☆30Updated 10 months ago
- code associated with crane-nature-2015, 10.1038/nature14450☆36Updated 10 years ago
- Docker for 4DN Hi-C processing pipeline☆61Updated last year
- Fontanka is a set of tools to work with fountains in Hi-C data. It aims to provide a flexible Python API and specialized CLI for calling …☆12Updated last month