Single cell interactive plotting tools
☆24Jun 12, 2020Updated 6 years ago
Alternatives and similar repositories for scPlot
Users that are interested in scPlot are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Single-cell Scalable Visualization and Analytics☆28Mar 26, 2019Updated 7 years ago
- Semi-supervised adversarial neural networks for classification of single cell transcriptomics data☆78Apr 4, 2026Updated 2 months ago
- Use batch balanced KNN (BBKNN) in R☆14Sep 9, 2025Updated 9 months ago
- Supplementary data for Petti, et al 2019 scRNA mutation publication☆16Feb 1, 2023Updated 3 years ago
- ☆14Mar 20, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Cloud-based scalable and efficient single-cell genomics workflows☆68May 6, 2026Updated last month
- A tutorial on NMFreg applied to cerebellum data.☆12Apr 7, 2020Updated 6 years ago
- A record of the analysis pipelines used to create the HTAPP data☆34Apr 15, 2025Updated last year
- STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data☆183Dec 18, 2021Updated 4 years ago
- A tool for analyzing trascriptomes of millions of single cells.☆94Apr 23, 2026Updated last month
- Visualization of scRNA-seq data.☆99Nov 10, 2022Updated 3 years ago
- ☆13Sep 8, 2020Updated 5 years ago
- Dynamical systems methods for RNA velocity analysis☆24May 19, 2021Updated 5 years ago
- ☆12Oct 23, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆13Dec 7, 2020Updated 5 years ago
- functions and algorithms for single cell RNA-seq analyses☆11Jan 26, 2021Updated 5 years ago
- Examples using Clustergrammer2 to explore high-dimensional datasets.☆40Aug 24, 2020Updated 5 years ago
- ☆15Sep 27, 2022Updated 3 years ago
- The Self-Assembling-Manifold (SAM) algorithm.☆47Dec 26, 2025Updated 5 months ago
- Benchmarking long-read RNA-seq analysis tools☆27Feb 17, 2025Updated last year
- ☆15Feb 28, 2022Updated 4 years ago
- Instructions and analysis scripts for single cell Higher Order Testing (scHOT)☆10Oct 7, 2020Updated 5 years ago
- Scripts used for the Differential NicheNet analyses in the Liver Atlas paper Guilliams et al., Cell 2022☆10Jan 12, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Single-cell Transcriptome and Regulome Analysis Pipeline☆310Mar 6, 2023Updated 3 years ago
- CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology☆69Jul 8, 2023Updated 2 years ago
- Reworked clustering metrics for assessing performance in imbalanced settings☆18Jun 3, 2024Updated 2 years ago
- Interactive software tool for the assignment of cell types in single-cell studies.☆34Apr 14, 2023Updated 3 years ago
- Signature Analysis and Visualization for Single-Cell RNA-seq☆181Jun 10, 2024Updated 2 years ago
- Cell type matching in single-cell RNA-sequencing data using FR-Match☆21Feb 16, 2026Updated 3 months ago
- ☆13Sep 2, 2024Updated last year
- ☆40Jun 24, 2025Updated 11 months ago
- Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines☆47Mar 13, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆22Jun 28, 2024Updated last year
- Preprocessing pipeline for (sc)ATAC data☆10Feb 22, 2022Updated 4 years ago
- Geared towards life scientists wanting to be able to understand and use basic statistical and machine learning methods☆18Jun 8, 2026Updated last week
- Code used for mouse single cell RNAseq testis atlas☆12Nov 28, 2020Updated 5 years ago
- minimal example implementations for bioinformatics workflow managers☆290Oct 27, 2021Updated 4 years ago
- Doublet detection in single-cell RNA-seq data.☆98Feb 6, 2025Updated last year
- ☆29Sep 4, 2023Updated 2 years ago