klarman-cell-observatory / scPlot
Single cell interactive plotting tools
☆23Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for scPlot
- Single-cell Scalable Visualization and Analytics☆25Updated 5 years ago
- Bead-based single-cell atac processing☆31Updated 3 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆24Updated 3 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆24Updated 10 months ago
- Differential ATAC-seq toolkit☆27Updated 11 months ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆31Updated last month
- kallisto index tag extractor☆20Updated 5 years ago
- Algorithms for single-cell analysis☆29Updated 3 years ago
- A python tool to do comparative analysis of mulitple single cell datasets.☆21Updated 5 years ago
- ☆29Updated last year
- R package with motifs for use with chromVAR☆25Updated 7 years ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆22Updated last year
- COMET Single-Cell Marker Detection tool☆31Updated 2 years ago
- .h5mu files interface for Seurat☆26Updated 11 months ago
- epigenome analysis to rank transcription factors☆13Updated 4 years ago
- A guide to using the Python scRNA-seq analysis package Scanpy from R☆13Updated 4 years ago
- Exon-Intron Split Analysis (EISA) in R☆15Updated 3 weeks ago
- Reconstruct the lineage topology of a scRNA-seq differentiation dataset.☆18Updated 4 years ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆22Updated 4 months ago
- Code and figures accompanying the paper, "Single-cell alternative splicing analysis with Expedition reveals splicing dynamics during neu…☆20Updated 7 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆25Updated 4 years ago
- Automated cell filtering for single-cell RNA sequencing data☆24Updated last year
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆15Updated 3 years ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆15Updated this week
- ☆37Updated 3 years ago
- HSCI/Catalyst Single-cell RNA-Seq Workshop☆19Updated 5 years ago
- Fast motif matching in R☆43Updated 10 months ago
- Clone of the Bioconductor repository for the batchelor package.☆16Updated 4 months ago
- 10x single cell RNA-seq data from the developing mouse retina☆16Updated 3 years ago
- ☆33Updated 5 years ago