Single cell interactive plotting tools
☆24Jun 12, 2020Updated 6 years ago
Alternatives and similar repositories for scPlot
Users that are interested in scPlot are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Single-cell Scalable Visualization and Analytics☆28Mar 26, 2019Updated 7 years ago
- Semi-supervised adversarial neural networks for classification of single cell transcriptomics data☆78Jun 10, 2026Updated last month
- Use batch balanced KNN (BBKNN) in R☆14Sep 9, 2025Updated 10 months ago
- Supplementary data for Petti, et al 2019 scRNA mutation publication☆16Feb 1, 2023Updated 3 years ago
- ☆14Mar 20, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Cloud-based scalable and efficient single-cell genomics workflows☆68Jul 6, 2026Updated 2 weeks ago
- A tutorial on NMFreg applied to cerebellum data.☆12Apr 7, 2020Updated 6 years ago
- A record of the analysis pipelines used to create the HTAPP data☆34Apr 15, 2025Updated last year
- STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data☆184Dec 18, 2021Updated 4 years ago
- A tool for analyzing trascriptomes of millions of single cells.☆94Jul 1, 2026Updated 3 weeks ago
- Visualization of scRNA-seq data.☆99Nov 10, 2022Updated 3 years ago
- ☆13Sep 8, 2020Updated 5 years ago
- Dynamical systems methods for RNA velocity analysis☆24May 19, 2021Updated 5 years ago
- ☆12Oct 23, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆13Dec 7, 2020Updated 5 years ago
- functions and algorithms for single cell RNA-seq analyses☆11Jan 26, 2021Updated 5 years ago
- A collection of open source bioinformatics tools developed and used by Addgene.☆11Jun 25, 2026Updated last month
- Examples using Clustergrammer2 to explore high-dimensional datasets.☆40Aug 24, 2020Updated 5 years ago
- ☆13Sep 2, 2024Updated last year
- Code used for mouse single cell RNAseq testis atlas☆12Nov 28, 2020Updated 5 years ago
- The Self-Assembling-Manifold (SAM) algorithm.☆48Dec 26, 2025Updated 6 months ago
- ☆15Sep 27, 2022Updated 3 years ago
- Benchmarking long-read RNA-seq analysis tools☆28Feb 17, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Instructions and analysis scripts for single cell Higher Order Testing (scHOT)☆10Oct 7, 2020Updated 5 years ago
- Scripts used for the Differential NicheNet analyses in the Liver Atlas paper Guilliams et al., Cell 2022☆10Jan 12, 2022Updated 4 years ago
- ☆15Feb 28, 2022Updated 4 years ago
- Single-cell Transcriptome and Regulome Analysis Pipeline☆312Mar 6, 2023Updated 3 years ago
- CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology☆69Jul 8, 2023Updated 3 years ago
- Reworked clustering metrics for assessing performance in imbalanced settings☆18Jun 3, 2024Updated 2 years ago
- Interactive software tool for the assignment of cell types in single-cell studies.☆34Apr 14, 2023Updated 3 years ago
- Signature Analysis and Visualization for Single-Cell RNA-seq☆182Jun 10, 2024Updated 2 years ago
- Cell type matching in single-cell RNA-sequencing data using FR-Match☆21Feb 16, 2026Updated 5 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆23Jun 28, 2024Updated 2 years ago
- ☆40Jun 24, 2025Updated last year
- Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines☆47Mar 13, 2025Updated last year
- Preprocessing pipeline for (sc)ATAC data☆10Feb 22, 2022Updated 4 years ago
- minimal example implementations for bioinformatics workflow managers☆290Oct 27, 2021Updated 4 years ago
- Doublet detection in single-cell RNA-seq data.☆98Feb 6, 2025Updated last year
- Pipeline for generating RNAseq-based cancer patient reports☆15Jul 12, 2026Updated last week