berenslab / umi-normalizationLinks
Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Genome Biology
☆40Updated 3 years ago
Alternatives and similar repositories for umi-normalization
Users that are interested in umi-normalization are comparing it to the libraries listed below
Sorting:
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- MultiMAP for integration of single cell multi-omics☆56Updated last year
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆59Updated last year
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- Quantifying experimental perturbations at single cell resolution☆109Updated 9 months ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- Dynamical systems methods for RNA velocity analysis☆24Updated 4 years ago
- Geometry-preserving random sampling☆87Updated 8 months ago
- A collection of scripts and tools for loading, processing, and handling single cell data.☆74Updated 2 years ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- Single-cell Hierarchical Poisson Factorization☆70Updated 2 years ago
- A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing☆34Updated last year
- Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…☆27Updated 3 years ago
- spatial transcriptome, single cell☆68Updated 2 years ago
- Multi-omics studies are available here☆51Updated 3 years ago
- An interface for Nested Stochastic Block Model for single cell analysis☆35Updated this week
- ☆22Updated 2 years ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆26Updated 2 years ago
- Multi-study integration of cellular trajectories☆19Updated 5 years ago
- Python client for the OmniPath web service☆45Updated 2 weeks ago
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 4 years ago
- Reproducing all analyses and figures for the ASAP-seq paper☆29Updated 4 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆38Updated 3 years ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆48Updated 5 months ago
- Semi-supervised adversarial neural networks for classification of single cell transcriptomics data☆75Updated 6 months ago
- A python package for chromVAR☆28Updated 2 years ago
- Digital Cell Sorter (DCS): single cell RNA-seq analysis toolkit. Documentation:☆24Updated 4 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆53Updated last month
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆53Updated 2 weeks ago
- K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data☆55Updated 2 years ago