☆15Aug 6, 2025Updated last year
Alternatives and similar repositories for famCircle
Users that are interested in famCircle are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆30Mar 4, 2022Updated 4 years ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 3 years ago
- The tools are used for displaying hic signal of genome☆25Jan 4, 2021Updated 5 years ago
- ☆25Feb 26, 2026Updated 7 months ago
- parallelLastz: Running Lastz in parallel☆18Sep 13, 2026Updated last month
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆27May 24, 2021Updated 5 years ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆23Aug 12, 2026Updated 2 months ago
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆17Sep 17, 2025Updated last year
- This is a method to find telomeres and centromeres in plants.☆43Jun 17, 2023Updated 3 years ago
- Annotate Olfactory receptor CDS from genome☆11Apr 29, 2023Updated 3 years ago
- ☆16Jul 25, 2021Updated 5 years ago
- Quartet-based estimation of species trees, trees of blobs, and level-1 networks☆16Sep 22, 2026Updated 3 weeks ago
- tool for dating gene age by micro- and macro-synteny with high speed and accuracy☆18Jan 3, 2026Updated 9 months ago
- Simple tools for working with Hi-C data☆20Dec 19, 2018Updated 7 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆20Dec 5, 2023Updated 2 years ago
- Convert Tandem Repeat Finder dat file output into gff3 format☆32Oct 3, 2026Updated 2 weeks ago
- Long-reads Gap-free Chromosome-scale Assembler☆79Mar 21, 2023Updated 3 years ago
- ☆15Jan 19, 2022Updated 4 years ago
- Script to help assessing the evolutionary history of a TE family☆16Sep 5, 2019Updated 7 years ago
- ☆27Jun 27, 2026Updated 3 months ago
- Detection and classification selective sweep use domain adaptive model☆11Apr 29, 2024Updated 2 years ago
- A shiny application to visualize MCscan result☆37Jun 26, 2026Updated 3 months ago
- Calculate the dn/ds (also pn and ps) value of cds☆14Jul 11, 2020Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated 2 years ago
- GeneMiner: a tool for extracting phylogenetic markers from next-generation sequencing data☆11Feb 22, 2024Updated 2 years ago
- A simple script to run an alignment with nucmer and visualise its results.☆10Apr 17, 2023Updated 3 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆39Sep 17, 2022Updated 4 years ago
- ☆21Jul 12, 2026Updated 3 months ago
- An R package to perform systematic quality checks on comparative genomics analyses☆12Mar 5, 2026Updated 7 months ago
- This python script can be used to detect Whole-genome duplication (WGD) with the dS based method.☆26Feb 22, 2019Updated 7 years ago
- The complete sequence of a Chinese individual☆14Oct 8, 2024Updated 2 years ago
- Renames headers in FASTA file☆13Jun 28, 2017Updated 9 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆13Mar 8, 2024Updated 2 years ago
- Whole organelle genome-wide alignment construction method, which ultilizes BLAST tool, to facilitate phylogeny analysis☆15Aug 27, 2023Updated 3 years ago
- A complete telomere-to-telomere assembly of sheep: T2T-sheep1.0☆21Nov 2, 2024Updated last year
- Figures for the CHM13 T2T SD paper.☆12Sep 12, 2021Updated 5 years ago
- De novo annotation of young retrotransposons☆46Apr 24, 2026Updated 5 months ago
- ☆15Aug 22, 2023Updated 3 years ago
- A program for assessing the T2T genome continuity and completeness☆98Sep 8, 2026Updated last month