Alternatives and similar repositories for famCircle

Users that are interested in famCircle are comparing it to the libraries listed below

• sc-zhang / T2Tools
  T2Tools is a toolset contains several tools for T2T assembly, and it is under development.
  ☆15Updated 3 months ago
• Atvar2 / plotHicGenome
  The tools are used for displaying hic signal of genome
  ☆24Updated 4 years ago
• phasegenomics / matlock
  Simple tools for working with Hi-C data
  ☆18Updated 7 years ago
• YaoZhou89 / WGSc
  ☆15Updated 3 years ago
• yuanw-18 / Allo4D
  This pipeline is used to distinguish allotetraploid subgenomes.
  ☆11Updated last year
• wangziwei08 / LTR-insertion-time-estimation
  ☆16Updated 2 years ago
• sc-zhang / ALLHiC_extensions
  Some components that speed up and reduce resource cost for original ALLHiC
  ☆14Updated 6 months ago
• yilinZhang-bio / Watermelon-pangenome
  ☆26Updated 2 years ago
• ChenHuaLab / CEGA
  Inferring natural selection by comparative population genomic analysis across species
  ☆25Updated 2 years ago
• yangli557 / AnnoSINE
  SINE annotation tool for plant genomes
  ☆18Updated last year
• legumeinfo / pandagma
  Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.
  ☆19Updated this week
• oushujun / PopTEvo
  Study of TE evolution in a population of genomes
  ☆10Updated 2 years ago
• andreaminio / AnnotationPipeline-EVM_based-DClab
  Cantù Lab @ UC Davis - Annotation pipeline - EVM based
  ☆14Updated last year
• HuiyangYu / HFKReads
  An ultra-fast and efficient tool for high frequency kmer sequencing reads extraction
  ☆19Updated last year
• sc-zhang / CATG
  CATG (Collinearity-based Assembly correcTor GUI) is a tool that can correct genome assembly with collinearity and generate tour files for…
  ☆17Updated 10 months ago
• idanefroni / Conservatory
  Identification of conserved non-coding sequences in plants
  ☆31Updated 2 months ago
• T2T-CN1 / CN1
  The complete sequence of a Chinese individual
  ☆10Updated last year
• shingocat / syntenyPlotByR
  plot genome alignment synteny
  ☆21Updated 5 years ago
• WarrenLab / chicken-pangenome-paper
  Scripts used to perform analyses in Rice et al. (2023)
  ☆16Updated 2 years ago
• lardo / khaper
  ☆29Updated 3 years ago
• yiliao1022 / SVGAP
  A pipeline for genomic variant detection with genome assemblies at population scale
  ☆34Updated 6 months ago
• Bean061 / ptgaul
  chloroplast genome assembly using long reads data
  ☆13Updated 5 months ago
• Adamtaranto / TRF2GFF
  Convert Tandem Repeat Finder dat file output into gff3 format
  ☆29Updated last month
• LAILAB-CAU / update-Mo17
  ☆29Updated 2 years ago
• noecochetel / North_American_Vitis_Pangenome
  Construct and Analyze the North American Vitis pangenome
  ☆29Updated 4 months ago
• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆22Updated last year
• pan-sol / pan-sol-pipelines
  ☆10Updated last year
• csh3 / RegCloser
  RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…
  ☆15Updated last year
• esrice / PBJelly
  a fork of the gap-closing pipeline PBJelly
  ☆15Updated 6 years ago
• schneebergerlab / GameteBinning
  ☆12Updated 5 years ago