Alternatives and similar repositories for sorghum_T2T

Users that are interested in sorghum_T2T are comparing it to the libraries listed below

• amsession / Kmer-based-Subgenome-Mapping
  ☆21Updated last year
• JM-SONG / GenomeSyn
  ☆25Updated 3 years ago
• Kirovez / pyTanFinder
  Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results
  ☆12Updated 6 years ago
• tangerzhang / calc_switchErr
  ☆27Updated 4 months ago
• Chenglin20170390 / Haplotype-diversity
  This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…
  ☆32Updated 7 months ago
• Immortal2333 / Telomeres_and_Centromeres
  This is a method to find telomeres and centromeres in plants.
  ☆41Updated 2 years ago
• Jianwei-Zhang / DEGAP
  Dynamic Elongation of a Genome Assembly Path
  ☆22Updated last year
• lardo / khaper
  ☆28Updated 3 years ago
• zhangrengang / Centromics
  Centromics: visualing centromeres with multiple omics data
  ☆24Updated 5 months ago
• zhangrengang / subgenome_phasing_example
  An Example of Subgenome Phasing for Complex Allopolyploidy
  ☆13Updated 3 months ago
• Atvar2 / plotHicGenome
  The tools are used for displaying hic signal of genome
  ☆24Updated 4 years ago
• likui345 / PGA
  ☆15Updated 4 years ago
• LQHHHHH / paml-yn00-run-pipeline
  A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method
  ☆10Updated 6 months ago
• zhangrengang / SOI
  Robust identification of orthologous Synteny with the Orthology Index
  ☆29Updated last week
• baozg / phased-assembly-check
  ☆30Updated 7 months ago
• lly1214 / CAU-T2T-Sheep
  A complete telomere-to-telomere assembly of sheep: T2T-sheep1.0
  ☆18Updated 9 months ago
• SwiftSeal / resistify
  Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…
  ☆39Updated this week
• zy-optimistic / GAEP
  A genome assembly assessment pipeline.
  ☆37Updated last year
• Immortal2333 / Haplotype_Genome_Assembly
  Genome haplotype assembly and assessment method
  ☆12Updated last year
• ShuaiNIEgithub / Centromics
  Centromics: visualing centromeres with multiple omics data
  ☆19Updated last year
• chenym1 / genetribe
  A tool for performing collinearity-incorporating homology inference
  ☆32Updated last year
• JiaoLab2021 / SynDiv
  A tool for quick and accurate calculation of syntenic diversity.
  ☆42Updated 7 months ago
• Zhenlisme / heliano
  HELIANO is a software for detection and classification of Helitron-like elements.
  ☆30Updated 2 months ago
• unavailable-2374 / Genome-Wide-Annotation-Pipeline
  This is a workflow that combines multiple software, mainly for whole genome annotation of eukaryotes.
  ☆25Updated last year
• NotebookOFXiaoMing / SuperPangenomeofGrapevines
  ☆19Updated last year
• rpianezza / GenomeDelta
  Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…
  ☆17Updated 9 months ago
• yuanw-18 / Allo4D
  This pipeline is used to distinguish allotetraploid subgenomes.
  ☆11Updated last year
• almeidasilvaf / doubletrouble
  An R package to identify and classify duplicated genes from whole-genome protein sequence data
  ☆27Updated 3 weeks ago
• baozg / assembly-annotation-pipeline
  Plant genome assembly and annotation pipeline using snakemake
  ☆46Updated 3 months ago
• rivasiker / autocoalhmm
  Automated pipeline for running CoalHMM
  ☆13Updated last year