The codes to assemble two sorghum cultivars
☆10May 11, 2024Updated 2 years ago
Alternatives and similar repositories for sorghum_T2T
Users that are interested in sorghum_T2T are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆16Jul 25, 2021Updated 5 years ago
- Methods for assembling high-quality genomes☆12Jul 7, 2023Updated 3 years ago
- An integrative pipeline for family-level super-pangenome analysis across coding and noncoding sequences.☆24Apr 13, 2026Updated 6 months ago
- This is a method to find telomeres and centromeres in plants.☆43Jun 17, 2023Updated 3 years ago
- genomic variant frequency estimation☆12Sep 4, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆45Dec 11, 2025Updated 10 months ago
- ☆21Jul 12, 2026Updated 3 months ago
- A complete telomere-to-telomere assembly of sheep: T2T-sheep1.0☆21Nov 2, 2024Updated 2 years ago
- Two pipelines to perform phylogenomic analysis☆12Oct 7, 2025Updated last year
- ☆31Apr 16, 2023Updated 3 years ago
- ☆30Oct 20, 2023Updated 3 years ago
- Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye☆38Apr 20, 2026Updated 6 months ago
- 基因组组装注释流程及脚本☆15Feb 12, 2023Updated 3 years ago
- ☆25Feb 26, 2026Updated 8 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Genome haplotype assembly and assessment method☆12Nov 24, 2023Updated 2 years ago
- This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings☆15Oct 1, 2021Updated 5 years ago
- Long Read Based SV Calling Tools Analysis☆16Mar 22, 2024Updated 2 years ago
- A script that parses the OrthoFinder output and keeps only the orthogroups that meet specific criteria☆20Oct 14, 2020Updated 6 years ago
- R Package for Codon Usage Bias Analysis. Comprehensive documentation and tutorials are available at:☆13Oct 29, 2025Updated last year
- Vue项目☆12Aug 13, 2018Updated 8 years ago
- Here, we sequence and de novo assemble chromosome-scale genomes of nine wild species and two cultivated accessions of tomato and construc…☆74Oct 23, 2025Updated last year
- Methods and recipes for Plant Genome Annotation - Transposable Elements☆21Jun 10, 2025Updated last year
- findGSEP package☆10Jul 27, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated 2 years ago
- ☆28Dec 15, 2025Updated 10 months ago
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆12Dec 7, 2022Updated 3 years ago
- Annotation Extraction Genomic Integration Suite (AEGIS) is a powerful and flexible Python-based suite for the manipulation, analysis, and…☆16Updated this week
- The IntroBlocker ancestry inference algorithm☆18Oct 24, 2023Updated 3 years ago
- Scripts for file processing and analysis in phylogenetics and phylogeography☆14Jan 6, 2021Updated 5 years ago
- Scripts that used in our chicken T2T manuscript.☆22Jan 14, 2026Updated 9 months ago
- A GUI tools for Gap closed based on assembly graph☆14Nov 4, 2025Updated last year
- GO KEGG annotation☆42Oct 19, 2022Updated 4 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A tool for visualization of pairwise alignments of multiple sequences☆19Aug 12, 2025Updated last year
- An R package to perform systematic quality checks on comparative genomics analyses☆12Mar 5, 2026Updated 8 months ago
- Rapid alignment-free method for introgression screening and GWAS using k-mer profiles☆32Oct 27, 2026Updated last week
- Methods for converting eQTL summary statistics into TWAS SNP-weights☆15Jul 2, 2025Updated last year
- Pipleline for deep centromeres analysis with CENdetectHOR☆11Aug 24, 2026Updated 2 months ago
- Codes for Vmap1.1 and Vmap3☆11Jan 5, 2026Updated 10 months ago
- Grapevine pangenome facilitates trait genetics and genomic breeding☆10May 8, 2024Updated 2 years ago