Immortal2333 / Haplotype_Genome_AssemblyLinks
Genome haplotype assembly and assessment method
☆12Updated last year
Alternatives and similar repositories for Haplotype_Genome_Assembly
Users that are interested in Haplotype_Genome_Assembly are comparing it to the libraries listed below
Sorting:
- A machine learning-based genotyping tool for structural variation in short reads☆24Updated this week
- Centromics: visualing centromeres with multiple omics data☆24Updated 6 months ago
- a Semi-automated pipeline for assembling T2T genome☆21Updated 2 weeks ago
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆39Updated 3 months ago
- ☆37Updated last month
- ☆25Updated 3 years ago
- This is a workflow that combines multiple software, mainly for whole genome annotation of eukaryotes.☆26Updated last year
- Dynamic Elongation of a Genome Assembly Path☆22Updated last year
- Scripts that used in our chicken T2T manuscript.☆21Updated 2 years ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆34Updated 11 months ago
- AlleleFinder is a tool for identifying allele genes from polyploid genome.☆31Updated this week
- A tool for performing collinearity-incorporating homology inference☆32Updated last year
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆32Updated 7 months ago
- A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method☆10Updated 6 months ago
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on Pore-C, HiFi-C/CiFi or Hi-C.☆57Updated 2 months ago
- An Integrative Toolkit for Assembling Plant Mitochondrial Genomes Using HiFi Reads☆11Updated last month
- ☆40Updated 2 years ago
- HiCAT new project☆29Updated 4 months ago
- scripts for the project of seven thaliana genomes assembly☆41Updated 4 years ago
- ☆20Updated last year
- Plant genome assembly and annotation pipeline using snakemake☆47Updated 4 months ago
- The codes to assemble two sorghum cultivars☆10Updated last year
- This is a method to find telomeres and centromeres in plants.☆41Updated 2 years ago
- Some useful gadgets☆10Updated 3 years ago
- Analyses of sex chromosome evolution in songbirds☆16Updated 6 years ago
- Graph-based Sequence Assembly Toolkit☆22Updated 9 months ago
- Automated pipeline for running CoalHMM☆13Updated last year
- Centromics: visualing centromeres with multiple omics data☆20Updated last year
- An Example of Subgenome Phasing for Complex Allopolyploidy☆13Updated 4 months ago
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆48Updated 4 months ago