Immortal2333 / Haplotype_Genome_AssemblyLinks
Genome haplotype assembly and assessment method
☆12Updated last year
Alternatives and similar repositories for Haplotype_Genome_Assembly
Users that are interested in Haplotype_Genome_Assembly are comparing it to the libraries listed below
Sorting:
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆41Updated last month
- Centromics: visualing centromeres with multiple omics data☆24Updated 7 months ago
- ☆25Updated 3 years ago
- An Integrative Toolkit for Assembling Plant Mitochondrial Genomes Using HiFi Reads☆13Updated last week
- This is a workflow that combines multiple software, mainly for whole genome annotation of eukaryotes.☆27Updated last year
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆32Updated this week
- Analyses of sex chromosome evolution in songbirds☆16Updated 6 years ago
- Scripts that used in our chicken T2T manuscript.☆22Updated 2 years ago
- ☆38Updated 3 months ago
- A machine learning-based genotyping tool for structural variation in short reads☆24Updated last month
- Centromics: visualing centromeres with multiple omics data☆20Updated last year
- Dynamic Elongation of a Genome Assembly Path☆22Updated last year
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆34Updated last year
- Automated pipeline for running CoalHMM☆13Updated last year
- ☆40Updated 2 years ago
- A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method☆10Updated 8 months ago
- a Semi-automated pipeline for assembling T2T genome☆24Updated 2 weeks ago
- A tool for performing collinearity-incorporating homology inference☆33Updated 2 years ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆43Updated 2 weeks ago
- scripts☆19Updated 6 years ago
- AlleleFinder is a tool for identifying allele genes from polyploid genome.☆33Updated last month
- Scripts for Shi et al. (2024). The suer-pangenome of Populus unveils genomic facets for its adaptation and diversification in widespread …☆16Updated last year
- A tool for quick and accurate calculation of syntenic diversity.☆42Updated last month
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on Pore-C, HiFi-C/CiFi or Hi-C.☆64Updated 3 months ago
- ☆21Updated last year
- An Example of Subgenome Phasing for Complex Allopolyploidy☆13Updated 5 months ago
- ☆12Updated 6 years ago
- Bulked-Segregant Analysis using vcf file with or without parents☆31Updated 10 months ago
- This is a method to find telomeres and centromeres in plants.☆42Updated 2 years ago
- Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO☆13Updated 7 years ago