Genome haplotype assembly and assessment method
☆12Nov 24, 2023Updated 2 years ago
Alternatives and similar repositories for Haplotype_Genome_Assembly
Users that are interested in Haplotype_Genome_Assembly are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆16Jul 25, 2021Updated 5 years ago
- Polygenetic Basis of Seedlessness in Grapevine (Vitis vinifera L.)☆10Mar 11, 2025Updated last year
- Codes for pear haplotype genome and pangenome graph construction☆13Jun 22, 2026Updated 4 months ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆41Oct 17, 2026Updated 2 weeks ago
- Methods for assembling high-quality genomes☆12Jul 7, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings☆15Oct 1, 2021Updated 5 years ago
- This is a method to find telomeres and centromeres in plants.☆43Jun 17, 2023Updated 3 years ago
- Cantù Lab @ UC Davis - Annotation pipeline - EVM based☆15Nov 1, 2024Updated 2 years ago
- Scripts for Shi et al. (2024). The suer-pangenome of Populus unveils genomic facets for its adaptation and diversification in widespread …☆20Apr 1, 2024Updated 2 years ago
- This is a workflow that combines multiple software, mainly for whole genome annotation of eukaryotes.☆32Apr 2, 2026Updated 7 months ago
- TO-GCN tools for STAR-Protocol☆10Feb 18, 2023Updated 3 years ago
- ☆17May 30, 2022Updated 4 years ago
- Graph-based Sequence Assembly Toolkit☆24Sep 11, 2026Updated last month
- HiFi-SR is a Python-based pipeline for the detection of plant mitochondrial structural rearrangements based on the mapping of PacBio high…☆13Jun 26, 2026Updated 4 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- The pipelines were built in the project resolving the genome of a diploid potato. Most of the scripts were sepcially designed to perform …☆24Jul 4, 2023Updated 3 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆59Updated this week
- Figures for the CHM13 T2T SD paper.☆12Sep 12, 2021Updated 5 years ago
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆193Jun 23, 2026Updated 4 months ago
- The complete reference genome for grapevine (Vitis vinifera L.) genetics and breeding☆14Feb 11, 2025Updated last year
- genomic variant frequency estimation☆12Sep 4, 2026Updated 2 months ago
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated 2 years ago
- GitHub Desktop tutorial repository☆14Feb 3, 2026Updated 9 months ago
- PhyloForge: Unifying micro and macro evolution with comprehensive genomic signals☆10May 17, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆14Nov 13, 2023Updated 2 years ago
- Chromosome-scale and haplotype-resolved assmebly of tetraploid cultiavetd potato with polyploidy graph binning☆28Aug 14, 2024Updated 2 years ago
- Convergence analysis using relative rate and correcting for phylogenetic relatedness☆12Apr 25, 2025Updated last year
- Fast implementation of HMMSEARCH optimized for high-memory systems using PyHMMER☆12Jan 13, 2026Updated 9 months ago
- ☆27Jun 27, 2026Updated 4 months ago
- Gene Family Annotation Workflow☆12Mar 26, 2024Updated 2 years ago
- ☆17Feb 2, 2026Updated 9 months ago
- Disease Resistance Analysis and Gene Orthology (DRAGO)☆11Jul 10, 2025Updated last year
- A chromosome-level polyploid phasing scaffolding tool☆29Oct 19, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆34Apr 7, 2025Updated last year
- Study of TE evolution in a population of genomes☆12Dec 11, 2023Updated 2 years ago
- ☆11Oct 23, 2024Updated 2 years ago
- Long Read Based SV Calling Tools Analysis☆16Mar 22, 2024Updated 2 years ago
- ☆12Jan 8, 2026Updated 9 months ago
- The complete sequence of a Chinese individual☆14Oct 8, 2024Updated 2 years ago
- read and analyse RepeatMasker output☆26May 22, 2023Updated 3 years ago