☆55May 5, 2025Updated 11 months ago
Alternatives and similar repositories for codetta
Users that are interested in codetta are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆46Jun 27, 2023Updated 2 years ago
- Discover and annotate the virome☆63Feb 11, 2026Updated 2 months ago
- Tool to estimate genome quality of microbial eukaryotes☆40Aug 1, 2025Updated 8 months ago
- ☆38Dec 6, 2023Updated 2 years ago
- ☆25Jun 20, 2023Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆30Jun 13, 2023Updated 2 years ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆65Apr 22, 2026Updated last week
- geNomad: Identification of mobile genetic elements☆303Mar 29, 2026Updated last month
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆39Apr 20, 2026Updated last week
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆204Aug 25, 2025Updated 8 months ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆45Feb 17, 2023Updated 3 years ago
- GEne Cluster prediction with COnditional random fields.☆84Mar 10, 2026Updated last month
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆23Nov 25, 2025Updated 5 months ago
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆182Mar 17, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Downstream processing of VAMB binning for Viral Elucidation☆55Jul 3, 2024Updated last year
- ☆58Apr 8, 2026Updated 3 weeks ago
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, prophage, etc.) relative to the…☆13Jan 19, 2026Updated 3 months ago
- Simulate mutations in genomes☆15Jun 15, 2020Updated 5 years ago
- ☆17May 26, 2022Updated 3 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71Mar 9, 2026Updated last month
- Find clustered hits from a BLAST search☆137Jan 16, 2026Updated 3 months ago
- SWORD - a highly efficient protein database search☆26Jan 15, 2024Updated 2 years ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆87Mar 12, 2026Updated last month
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- 🦠 A tool for identifying and analyzing functions in microbial genomes.☆16Sep 25, 2024Updated last year
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆15Apr 4, 2026Updated 3 weeks ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆81Jun 17, 2024Updated last year
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆50Oct 12, 2023Updated 2 years ago
- MAGScoT - a MAG scoring and refinement tool☆44Apr 8, 2026Updated 3 weeks ago
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆24Nov 2, 2025Updated 5 months ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆82Sep 8, 2025Updated 7 months ago
- Bacterial Operon Finder for Functional Organization☆15Nov 14, 2023Updated 2 years ago
- BEAV: Bacterial Element Annotation reVamped☆77Aug 21, 2025Updated 8 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆23Feb 7, 2022Updated 4 years ago
- PHANOTATE: a gene caller for phages.☆87Dec 2, 2024Updated last year
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆28Feb 12, 2026Updated 2 months ago
- a python package for automated generation of phylogenetic trees from genbank files☆23Apr 9, 2026Updated 3 weeks ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆249Oct 12, 2025Updated 6 months ago
- Automatic eukaryotic taxonomic classification☆29May 9, 2025Updated 11 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆48Feb 5, 2026Updated 2 months ago