☆56May 5, 2025Updated last year
Alternatives and similar repositories for codetta
Users that are interested in codetta are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆47Jun 27, 2023Updated 3 years ago
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆18Aug 7, 2026Updated 3 weeks ago
- ☆37Dec 6, 2023Updated 2 years ago
- Tool to estimate genome quality of microbial eukaryotes☆45Aug 14, 2026Updated 2 weeks ago
- ☆27Jun 20, 2023Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆30Jun 13, 2023Updated 3 years ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆91Mar 12, 2026Updated 5 months ago
- 🦠 A tool for identifying and analyzing functions in microbial genomes.☆16Sep 25, 2024Updated last year
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆66Apr 22, 2026Updated 4 months ago
- geNomad: Identification of mobile genetic elements☆328Mar 29, 2026Updated 5 months ago
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆210Aug 25, 2025Updated last year
- Discover and annotate the virome☆64Jun 10, 2026Updated 2 months ago
- GEne Cluster prediction with COnditional random fields.☆87Jul 29, 2026Updated last month
- Classify metagenomic contigs as eukaryotic or prokaryotic☆46Feb 17, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Downstream processing of VAMB binning for Viral Elucidation☆55Jul 3, 2024Updated 2 years ago
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆190Mar 17, 2026Updated 5 months ago
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆41Apr 20, 2026Updated 4 months ago
- ☆63Jul 16, 2026Updated last month
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, prophage, etc.) relative to the…☆13Jan 19, 2026Updated 7 months ago
- Simulate mutations in genomes☆15Jun 15, 2020Updated 6 years ago
- Find clustered hits from a BLAST search☆149Aug 6, 2026Updated 3 weeks ago
- ☆16May 26, 2022Updated 4 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆72Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Accurate and robust inference of microbial growth dynamics from metagenomic sequencing☆20May 11, 2022Updated 4 years ago
- SWORD - a highly efficient protein database search☆26Jan 15, 2024Updated 2 years ago
- ☆25Feb 7, 2022Updated 4 years ago
- Discovery of conserved gene clusters in multiple genomes☆135Aug 21, 2026Updated last week
- MAGScoT - a MAG scoring and refinement tool☆49Apr 8, 2026Updated 4 months ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆83Jun 17, 2024Updated 2 years ago
- Bacterial Operon Finder for Functional Organization☆14Nov 14, 2023Updated 2 years ago
- BEAV: Bacterial Element Annotation reVamped☆77Aug 21, 2025Updated last year
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆85Sep 8, 2025Updated 11 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- PHANOTATE: a gene caller for phages.☆93Dec 2, 2024Updated last year
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆28Feb 12, 2026Updated 6 months ago
- a python package for automated generation of phylogenetic trees from genbank files☆24Apr 9, 2026Updated 4 months ago
- Binning Virus Genomes from Metagenomes☆76Jul 13, 2022Updated 4 years ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆110Jul 7, 2026Updated last month
- EzAAI - High Throughput Prokaryotic AAI Calculator☆48Feb 5, 2026Updated 6 months ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆263May 13, 2026Updated 3 months ago