☆23May 8, 2023Updated 2 years ago
Alternatives and similar repositories for gt-pro
Users that are interested in gt-pro are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Microbial agile accurate SNP Typer☆30Dec 27, 2023Updated 2 years ago
- ☆21Feb 13, 2020Updated 6 years ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆55Sep 7, 2025Updated 7 months ago
- gutSMASH☆59Oct 3, 2025Updated 6 months ago
- Instantaneous Metagenome Taxonomic Profiling with MetaKSSD☆24Nov 3, 2025Updated 5 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Find Co-Abundant Groups of Genes☆12Aug 3, 2020Updated 5 years ago
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, prophage, etc.) relative to the…☆13Jan 19, 2026Updated 3 months ago
- Improvement of metagenome-assembled genomes☆57Mar 17, 2020Updated 6 years ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆16Mar 5, 2026Updated last month
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- A method for reconstruction of subspecies composition and functional profiles from metagenomic data☆13May 27, 2024Updated last year
- PHANOTATE: a gene caller for phages.☆87Dec 2, 2024Updated last year
- Estimate metagenomic coverage and sequence diversity☆60Dec 18, 2025Updated 4 months ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆43Sep 3, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- lsaBGC - suite for pan-BGC-omics analysis☆23Nov 21, 2025Updated 5 months ago
- Bacterial Operon Finder for Functional Organization☆15Nov 14, 2023Updated 2 years ago
- Screening Historical Events of Recombination in a Phylogeny via Ancestral Sequences☆11Sep 3, 2025Updated 7 months ago
- Metalign: efficient alignment-based metagenomic profiling via containment min hash☆33Sep 12, 2023Updated 2 years ago
- Scalable creating/updating of metagenome profiling databases☆62Jun 25, 2025Updated 10 months ago
- a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree☆36Sep 20, 2022Updated 3 years ago
- A pipeline for construction and graphical visualization of annotated pangenome networks.☆16Oct 24, 2018Updated 7 years ago
- Pan-genome Analysis☆12May 4, 2025Updated 11 months ago
- Strain resolved metagenome simulator☆13Aug 11, 2018Updated 7 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A FASTQ lossless compression algorithm especially designed for nanopore sequencing FASTQ files.☆10Jul 2, 2020Updated 5 years ago
- Binning Virus Genomes from Metagenomes☆73Jul 13, 2022Updated 3 years ago
- Accurate, resource-frugal and deterministic DNA sequence classifier.☆36Mar 4, 2026Updated last month
- URMAP ultra-fast read mapper☆38Jun 15, 2020Updated 5 years ago
- ☆30Sep 21, 2023Updated 2 years ago
- Space-efficient pseudoalignment with a colored de Bruijn graph☆53Mar 13, 2025Updated last year
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆75Mar 3, 2026Updated last month
- StrainEst - abundance estimation of strains☆20Jan 17, 2020Updated 6 years ago
- StrainFinder☆30Jul 8, 2018Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆51Mar 26, 2026Updated last month
- A tool for the identification of coincident (associating and dissociating) genes in pangenomes.☆110Oct 20, 2023Updated 2 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆72Dec 1, 2025Updated 4 months ago
- Genomewide Epistasis Analysis on Bacteria☆15May 13, 2025Updated 11 months ago
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆50Oct 12, 2023Updated 2 years ago
- An integrated pipeline for estimating strain-level genomic variation from metagenomic data☆134Oct 6, 2023Updated 2 years ago
- ☆55May 5, 2025Updated 11 months ago