zjshi / gt-pro
☆23Updated last year
Related projects: ⓘ
- ☆23Updated 7 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆45Updated last month
- ☆16Updated 4 years ago
- A python library for predicting phage lifestyle based on genome sequence☆34Updated last year
- ☆43Updated last year
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆21Updated 3 weeks ago
- Improvement of metagenome-assembled genomes☆48Updated 4 years ago
- CLI tool for finding gene clusters in many genomes and placing them in discrete groups based on gene content similarity.☆17Updated 5 months ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆23Updated this week
- strain-level analysis tools☆32Updated 2 weeks ago
- Set of utilities on sequences and BAM files☆25Updated 2 years ago
- Detect contigs of complete circular genomes☆21Updated 5 years ago
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆13Updated 2 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆19Updated 2 years ago
- ☆36Updated 9 months ago
- Strain Resolution ON Graphs☆45Updated last year
- MAG Circularization Method☆31Updated 2 years ago
- ☆37Updated last month
- StrainFinder☆27Updated 6 years ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆35Updated last month
- Phasing for metagenomics using PacBio long reads☆17Updated 3 years ago
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆19Updated 9 months ago
- Prophage Activity Estimator☆26Updated 3 months ago
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆24Updated 5 months ago
- A workflow and scripts for large-scale antiSMASH analyses☆27Updated this week
- OPAL: Open-community Profiling Assessment tooL☆26Updated 3 weeks ago
- This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"☆19Updated 3 years ago
- A toolkit for prokaryotic comparative genomics☆25Updated last week