zjshi / gt-proLinks
☆23Updated 2 years ago
Alternatives and similar repositories for gt-pro
Users that are interested in gt-pro are comparing it to the libraries listed below
Sorting:
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- BiG-MEx implementation as Docker images and R packages☆13Updated 3 years ago
- strain-level analysis tools☆37Updated 7 months ago
- Scalable creating/updating of metagenome profiling databases☆60Updated 2 years ago
- SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.☆20Updated 2 months ago
- Strain Prediction and Analysis with Representative SEquence☆19Updated 6 months ago
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆24Updated 8 months ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆19Updated 2 years ago
- ☆16Updated 4 years ago
- Detect contigs of complete circular genomes☆23Updated 6 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- StrainFinder☆27Updated 6 years ago
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆37Updated 5 months ago
- OPAL: Open-community Profiling Assessment tooL☆28Updated 4 months ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆31Updated 4 months ago
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆19Updated last year
- ☆41Updated 4 years ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated 9 months ago
- Phasing for metagenomics using PacBio long reads☆17Updated 3 years ago
- Improvement of metagenome-assembled genomes☆52Updated 5 years ago
- multiPhATE with comparative genomics☆19Updated 3 years ago
- ☆45Updated last year
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆27Updated last month
- ☆32Updated 3 months ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆63Updated 3 months ago
- Strain Resolution ON Graphs☆47Updated last year
- Gene-flank analysis tool☆27Updated 5 months ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆28Updated 4 months ago
- This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"☆20Updated 4 years ago