endixk / ezaaiLinks
EzAAI - High Throughput Prokaryotic AAI Calculator
☆45Updated 5 months ago
Alternatives and similar repositories for ezaai
Users that are interested in ezaai are comparing it to the libraries listed below
Sorting:
- Downstream processing of VAMB binning for Viral Elucidation☆53Updated last year
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆35Updated 2 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆40Updated 3 years ago
- IslandPath standalone software☆34Updated 2 years ago
- ☆33Updated 2 years ago
- Prophage Activity Estimator☆29Updated last year
- ☆56Updated 5 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆70Updated this week
- ☆24Updated 7 years ago
- Bacterial GWAS analysis☆46Updated 2 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 8 months ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆83Updated this week
- ☆20Updated last year
- A python library for predicting phage lifestyle based on genome sequence☆37Updated 2 years ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- Classify metagenomic contigs as eukaryotic or prokaryotic☆43Updated 2 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆32Updated 3 weeks ago
- Gene Absence Presence Identification tool.☆27Updated 9 months ago
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆21Updated 2 years ago
- Taxonomic classification of viruses at Order and Family level☆21Updated 2 years ago
- whole genome MLST analysis☆50Updated 6 months ago
- SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.☆24Updated last month
- Automatic eukaryotic taxonomic classification☆29Updated 7 months ago
- Discover and annotate the virome☆56Updated 2 months ago
- post processing of bacterial pangenome gene presence/absence matrices☆63Updated 10 months ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆55Updated 2 months ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Updated 4 years ago
- A toolkit for prokaryotic comparative genomics☆51Updated 2 months ago