endixk / ezaaiLinks
EzAAI - High Throughput Prokaryotic AAI Calculator
☆46Updated this week
Alternatives and similar repositories for ezaai
Users that are interested in ezaai are comparing it to the libraries listed below
Sorting:
- Downstream processing of VAMB binning for Viral Elucidation☆54Updated last year
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆35Updated 2 years ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆83Updated 2 weeks ago
- Prophage Activity Estimator☆31Updated last year
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71Updated last month
- IslandPath standalone software☆35Updated 2 years ago
- ☆34Updated 2 years ago
- ☆24Updated 7 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆40Updated 3 years ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- ☆56Updated last week
- A toolkit for prokaryotic comparative genomics☆51Updated 3 months ago
- ☆62Updated last year
- post processing of bacterial pangenome gene presence/absence matrices☆63Updated 2 weeks ago
- Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.☆28Updated 9 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆32Updated 2 months ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆63Updated 2 years ago
- Calculate assocations between genes and traits☆29Updated 10 months ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- Bacterial GWAS analysis☆46Updated 2 weeks ago
- KEGG Module Evaluation Tool☆32Updated 2 years ago
- ☆20Updated last year
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆71Updated this week
- Automatic eukaryotic taxonomic classification☆29Updated 8 months ago
- A python library for predicting phage lifestyle based on genome sequence☆40Updated 2 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆57Updated 9 months ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Updated 5 years ago
- Tool to estimate genome quality of microbial eukaryotes☆38Updated 6 months ago