rvaser / sword
SWORD - a highly efficient protein database search
☆26Updated 9 months ago
Related projects ⓘ
Alternatives and complementary repositories for sword
- Find Unique genomic Regions☆29Updated this week
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆22Updated last year
- Non-redundant pangenome assemblies from multiple genomes or bins☆13Updated 3 months ago
- Haplotype-aware genome assembly toolkit☆29Updated 4 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆33Updated last year
- Metalign: efficient alignment-based metagenomic profiling via containment min hash☆32Updated last year
- Output FASTQ summary statistics in JSON format☆29Updated 2 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆22Updated 7 months ago
- INC-Seq: Accurate single molecule reads using nanopore sequencing☆13Updated 4 years ago
- Variant call verification☆15Updated last year
- Exact Tandem Repeat Finder (not a TRF replacement)☆45Updated 5 years ago
- Python bindings for the TaxonKit library☆31Updated 3 months ago
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆20Updated 4 months ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆31Updated 2 years ago
- Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler☆15Updated 4 months ago
- extract MSAs from genome variation graphs☆33Updated 4 years ago
- Bioinformatics pipeline for nanopore sequencing data☆10Updated 5 years ago
- URMAP ultra-fast read mapper☆39Updated 4 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆29Updated 3 years ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆23Updated last week
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆31Updated this week
- ☆45Updated 2 years ago
- Python3 module for running MUMmer and reading the output☆26Updated this week
- Convert HAL to VG☆21Updated 3 months ago
- Variant call adjudication☆16Updated 4 months ago
- Finding prophage regions in bacterial genomes using brute force☆22Updated last year
- ☆15Updated 5 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated last year
- Collection of utilities for working with PacBio-based assemblies☆13Updated last year