rvaser / sword
SWORD - a highly efficient protein database search
☆26Updated 10 months ago
Related projects ⓘ
Alternatives and complementary repositories for sword
- Haplotype-aware genome assembly toolkit☆29Updated 4 years ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆22Updated last year
- Find Unique genomic Regions☆29Updated this week
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆36Updated 11 months ago
- De novo VIral Genome Annotator☆21Updated 2 months ago
- Non-redundant pangenome assemblies from multiple genomes or bins☆13Updated 3 months ago
- Kraken2 Server☆21Updated 10 months ago
- Rapid competitive read demulitplexer. Made with tries.☆23Updated last year
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆31Updated 3 years ago
- Bioinformatics pipeline for nanopore sequencing data☆10Updated 5 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated last year
- Utility program for extracting sequences from a fasta/fastq file☆36Updated 8 months ago
- Output FASTQ summary statistics in JSON format☆29Updated 2 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆41Updated 4 months ago
- Intra-species bacterial contamination detection☆22Updated this week
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆20Updated this week
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆13Updated 2 years ago
- A method of assessing sequence complexity based on kmer frequencies☆28Updated 6 years ago
- Nail is an Alignment Inference tooL☆41Updated this week
- ☆15Updated 4 months ago
- ☆19Updated 7 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 3 years ago
- Detection of incorrectly labeled sequences across kingdoms☆80Updated 2 years ago
- Trimming tool for Oxford Nanopore sequence data☆22Updated 3 years ago
- Accurate, resource-frugal and deterministic DNA sequence classifier.☆33Updated 3 weeks ago
- Classify sequencing reads using MinHash.☆48Updated 4 years ago
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Updated 3 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆22Updated 7 months ago
- ☆40Updated this week