rvaser / swordLinks
SWORD - a highly efficient protein database search
☆26Updated last year
Alternatives and similar repositories for sword
Users that are interested in sword are comparing it to the libraries listed below
Sorting:
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- Read contamination removal☆25Updated last year
- Variant call verification☆16Updated 3 months ago
- Find Unique genomic Regions☆30Updated this week
- Remove human reads from a sequencing run☆40Updated last month
- Simple-to-use interactive comparison of two bacterial genomes☆16Updated 2 months ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 4 years ago
- sunburst plots for taxonomy - working to update Krona☆40Updated 2 weeks ago
- Finding prophage regions in bacterial genomes using brute force☆22Updated 2 years ago
- De novo VIral Genome Annotator☆23Updated 11 months ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 4 years ago
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆37Updated last year
- ☆45Updated 3 years ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated last year
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated 2 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆53Updated 4 months ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆38Updated 5 months ago
- CAMITAX: Taxon labels for microbial genomes☆30Updated last year
- software to identify primers that can distinguish genomes☆21Updated 7 months ago
- Benchmark MinION assembler pipelines and publish your results in a heartbeat!☆15Updated 5 years ago
- Python package to obtain, parse and explore biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆45Updated last month
- Genomic neighbor typing of bacterial pathogens using MinHash☆44Updated 2 years ago
- Haplotype-aware genome assembly toolkit☆30Updated 5 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆33Updated 2 months ago
- Output FASTQ summary statistics in JSON format☆30Updated 2 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- ☆44Updated last month
- A healthy human gut genome collection☆24Updated last week
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆27Updated last week
- frame-shift correction for long-read (meta)genomics☆34Updated last year