SWORD - a highly efficient protein database search
☆26Jan 15, 2024Updated 2 years ago
Alternatives and similar repositories for sword
Users that are interested in sword are comparing it to the libraries listed below
Sorting:
- Just another minhash implementation.☆12Feb 23, 2026Updated last week
- DNA assembler developed on FER (Croatia), RBI (Croatia) and GIS (Singapore)☆18Jan 18, 2016Updated 10 years ago
- Read contamination removal☆25Jan 24, 2024Updated 2 years ago
- Scotch pipeline for indel calling.☆10Nov 25, 2019Updated 6 years ago
- KAUST Assembly Read Error Correction Tool☆15Aug 15, 2015Updated 10 years ago
- Rust coder/decoder for Nucleotide Archival Format (NAF) files.☆10Jan 31, 2025Updated last year
- We present HRIBO (High-throughput annotation by Ribo-seq), a workflow to enable reproducible and high-throughput analysis of bacterial Ri…☆13May 22, 2025Updated 9 months ago
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 2 months ago
- ☆52May 5, 2025Updated 9 months ago
- C++ tools for NCBI taxonomy tasks☆12Jun 26, 2025Updated 8 months ago
- QuasiModo: Assessing viral genomic analysis methods on HCMV strain mixture☆12Sep 22, 2022Updated 3 years ago
- Profile HMM-based hybrid error correction algorithm for long reads☆21Aug 15, 2018Updated 7 years ago
- Finding prophage regions in bacterial genomes using brute force☆22Jan 20, 2023Updated 3 years ago
- A command line program for large scale buffering between piped programs☆16Nov 19, 2021Updated 4 years ago
- Fasten toolkit, for streaming operations on fastq files☆81Oct 24, 2025Updated 4 months ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Jan 29, 2023Updated 3 years ago
- A tool for Racon polishing of miniasm assemblies☆78Sep 5, 2025Updated 5 months ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.☆14Nov 10, 2025Updated 3 months ago
- ClaMSA (Classify Multiple Sequence Alignments).☆13Nov 21, 2024Updated last year
- ☆13Dec 26, 2025Updated 2 months ago
- Package to extract Unannotated Regions from prokaryotic genomes report coding and pseudogenised genes delimited by stop codons - Named S…☆17Jan 15, 2026Updated last month
- Variant call verification☆16May 12, 2025Updated 9 months ago
- Collection of utilities for working with PacBio-based assemblies☆13Apr 2, 2023Updated 2 years ago
- Improved Phased Assembler☆28Mar 11, 2022Updated 3 years ago
- Variant call adjudication☆16Jun 13, 2024Updated last year
- Correction of palindromes in long reads from PacBio and Nanopore☆14Mar 1, 2022Updated 4 years ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Jan 16, 2026Updated last month
- Bioinformatics 101 tool for counting unique k-length substrings in DNA☆33Feb 17, 2026Updated last week
- ☆134Aug 29, 2024Updated last year
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆38Mar 25, 2025Updated 11 months ago
- Nanopore basecalling and consensus decoding☆46Jul 22, 2022Updated 3 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Jan 18, 2019Updated 7 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Mar 25, 2022Updated 3 years ago
- Accurate, resource-frugal and deterministic DNA sequence classifier.☆36Feb 2, 2026Updated last month
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- ☆18Mar 20, 2025Updated 11 months ago
- SIMD partial order alignment tool/library☆171Sep 21, 2025Updated 5 months ago