EBI-Metagenomics / EukCCLinks
Tool to estimate genome quality of microbial eukaryotes
☆37Updated last month
Alternatives and similar repositories for EukCC
Users that are interested in EukCC are comparing it to the libraries listed below
Sorting:
- ☆53Updated 2 months ago
- ☆24Updated 6 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆62Updated last week
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated last month
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆60Updated 5 months ago
- Improvement of metagenome-assembled genomes☆53Updated 5 years ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆39Updated 2 years ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆74Updated last year
- ☆75Updated this week
- GTDB taxonomy taxdump files with trackable TaxIds☆55Updated 4 months ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆75Updated 2 months ago
- ☆57Updated last year
- A toolbox for improving metagenome-assembled genomes.☆62Updated 4 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- Automatic eukaryotic taxonomic classification☆28Updated 4 months ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- Microbial Populations as Clusters Of Gene Transfer☆43Updated last year
- ☆60Updated last year
- Binning Virus Genomes from Metagenomes☆65Updated 3 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated last year
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆52Updated last month
- Prediction of prophages from bacterial genomes☆79Updated 3 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆30Updated 10 months ago
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆52Updated 3 months ago
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆87Updated last year
- 🦠🧬🧑💻📇 Microbial genomes-to-report pipeline☆62Updated this week
- IslandPath standalone software☆33Updated last year
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆61Updated last year
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆85Updated 4 months ago