EBI-Metagenomics / EukCCLinks
Tool to estimate genome quality of microbial eukaryotes
☆38Updated 5 months ago
Alternatives and similar repositories for EukCC
Users that are interested in EukCC are comparing it to the libraries listed below
Sorting:
- ☆24Updated 7 years ago
- ☆56Updated 6 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71Updated this week
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- EzAAI - High Throughput Prokaryotic AAI Calculator☆45Updated 5 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆35Updated 2 years ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆43Updated 2 years ago
- Binning Virus Genomes from Metagenomes☆68Updated 3 years ago
- ☆62Updated last year
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆54Updated 2 months ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- post processing of bacterial pangenome gene presence/absence matrices☆63Updated 10 months ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆83Updated last week
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆75Updated last year
- A toolkit for prokaryotic comparative genomics☆51Updated 2 months ago
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆89Updated last year
- Downstream processing of VAMB binning for Viral Elucidation☆53Updated last year
- KEGG Module Evaluation Tool☆32Updated 2 years ago
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆80Updated 2 years ago
- Prophage Activity Estimator☆29Updated last year
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆57Updated 7 months ago
- ☆20Updated last year
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 3 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆32Updated last month
- GTDB taxonomy taxdump files with trackable TaxIds☆56Updated 8 months ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆63Updated last month
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆49Updated 2 years ago
- A tool for removing redundant genomes from a set of assemblies☆78Updated 4 months ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆73Updated 6 years ago