EBI-Metagenomics / EukCCLinks
Tool to estimate genome quality of microbial eukaryotes
☆38Updated 4 months ago
Alternatives and similar repositories for EukCC
Users that are interested in EukCC are comparing it to the libraries listed below
Sorting:
- ☆24Updated 7 years ago
- ☆54Updated 5 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆70Updated 3 weeks ago
- post processing of bacterial pangenome gene presence/absence matrices☆63Updated 9 months ago
- Binning Virus Genomes from Metagenomes☆68Updated 3 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆88Updated last year
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 4 months ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆55Updated last month
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆75Updated last year
- ☆20Updated last year
- A toolkit for prokaryotic comparative genomics☆51Updated 2 months ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆81Updated last week
- Classify metagenomic contigs as eukaryotic or prokaryotic☆42Updated 2 years ago
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆76Updated 2 years ago
- Microbial Populations as Clusters Of Gene Transfer☆45Updated 2 years ago
- Automatic eukaryotic taxonomic classification☆28Updated 7 months ago
- Prediction of prophages from bacterial genomes☆81Updated 6 months ago
- Reorients assembled microbial sequences☆131Updated 3 months ago
- A toolbox for improving metagenome-assembled genomes.☆62Updated 4 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆56Updated 7 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆52Updated last year
- KEGG Module Evaluation Tool☆32Updated 2 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆35Updated 2 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆32Updated 2 weeks ago
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆57Updated 6 months ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆73Updated 5 years ago
- ☆61Updated last year
- Horizontal gene transfer (HGT) identification pipeline☆64Updated 2 years ago