Kalan-Lab / zolLinks
zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
☆67Updated this week
Alternatives and similar repositories for zol
Users that are interested in zol are comparing it to the libraries listed below
Sorting:
- Bacterial GWAS analysis☆46Updated 3 weeks ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 3 months ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- A toolkit for prokaryotic comparative genomics☆51Updated last month
- Discover and annotate the virome☆53Updated last month
- Classify metagenomic contigs as eukaryotic or prokaryotic☆41Updated 2 years ago
- BEAV: Bacterial Element Annotation reVamped☆72Updated 3 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆51Updated last year
- Calculate assocations between genes and traits☆29Updated 8 months ago
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated 3 months ago
- A workflow and scripts for large-scale antiSMASH analyses☆46Updated 7 months ago
- post processing of bacterial pangenome gene presence/absence matrices☆63Updated 8 months ago
- ☆54Updated 4 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆31Updated last month
- ☆32Updated 2 years ago
- ☆79Updated last week
- Prophage Activity Estimator☆28Updated last year
- Tool to estimate genome quality of microbial eukaryotes☆38Updated 3 months ago
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆56Updated 5 months ago
- Automatic eukaryotic taxonomic classification☆28Updated 6 months ago
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆56Updated this week
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 3 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆39Updated 3 years ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆42Updated 3 weeks ago
- KEGG Module Evaluation Tool☆32Updated 2 years ago
- Unified Human Gut Virome Catalog☆38Updated last week
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆52Updated 3 weeks ago
- ARG normalization by mapping to the ARO ontology.☆59Updated 3 months ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆63Updated last month