zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
☆71Jan 5, 2026Updated last month
Alternatives and similar repositories for zol
Users that are interested in zol are comparing it to the libraries listed below
Sorting:
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆54Sep 7, 2025Updated 5 months ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆85Nov 13, 2025Updated 3 months ago
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, prophage, etc.) relative to the…☆13Jan 19, 2026Updated last month
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆41Sep 28, 2025Updated 5 months ago
- Discovery of conserved gene clusters in multiple genomes☆124Jan 16, 2026Updated last month
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆235Oct 12, 2025Updated 4 months ago
- GEne Cluster prediction with COnditional random fields.☆80Jan 24, 2026Updated last month
- Bifrost graph gene caller.☆98Jan 20, 2026Updated last month
- Fast tool to build the core genome of prokaryotic genomes. Can handle large datasets. Dependencis: Usearch & Numpy☆10Nov 26, 2025Updated 3 months ago
- Metagenomic Binning Algorithm☆51Jan 16, 2026Updated last month
- Fast implementation of KofamScan optimized for high-memory systems using PyHMMER☆17Jan 13, 2026Updated last month
- Metaphor: a general-purpose workflow for assembly and binning of metagenomes☆40Nov 14, 2025Updated 3 months ago
- ☆15Jan 28, 2026Updated last month
- geNomad: Identification of mobile genetic elements☆290Nov 10, 2025Updated 3 months ago
- 🦠🧬🧑💻📇 Microbial genomes-to-report pipeline☆73Updated this week
- lsaBGC - suite for pan-BGC-omics analysis☆23Nov 21, 2025Updated 3 months ago
- ☆82Nov 27, 2025Updated 3 months ago
- ☆18Mar 20, 2025Updated 11 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆607Feb 18, 2026Updated last week
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆28Jan 15, 2026Updated last month
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆294Feb 3, 2026Updated 3 weeks ago
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆17Nov 24, 2025Updated 3 months ago
- A bioinformatic toolkit to align genome assemblies into pangenome graphs☆121Jan 20, 2026Updated last month
- Genome size estimation from long read overlaps☆81Feb 19, 2026Updated last week
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Aug 22, 2024Updated last year
- SemiBin: metagenomics binning with self-supervised deep learning☆155Feb 19, 2026Updated last week
- fast phage annotation program☆197Feb 1, 2026Updated last month
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆69Sep 26, 2024Updated last year
- Discover and annotate the virome☆59Feb 11, 2026Updated 2 weeks ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆147Updated this week
- Grabbing genome accessions & download info based on taxonomy, using the NCBI REST API, w00t☆12Feb 23, 2025Updated last year
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆42Sep 3, 2024Updated last year
- A hybrid assembly and MAG recovery pipeline (and more!)☆104Jan 27, 2026Updated last month
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆60Nov 3, 2023Updated 2 years ago
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆81Dec 4, 2025Updated 2 months ago
- Identify and remove contaminants from metagenome-assembled genomes☆18Feb 16, 2024Updated 2 years ago
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆15Sep 24, 2024Updated last year
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆71Feb 5, 2026Updated 3 weeks ago
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆25Mar 19, 2023Updated 2 years ago