Kalan-Lab / zolLinks
zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
☆71Updated 2 weeks ago
Alternatives and similar repositories for zol
Users that are interested in zol are comparing it to the libraries listed below
Sorting:
- Bacterial GWAS analysis☆46Updated last week
- A toolkit for prokaryotic comparative genomics☆51Updated 3 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆45Updated 5 months ago
- BEAV: Bacterial Element Annotation reVamped☆73Updated 4 months ago
- Discover and annotate the virome☆58Updated 3 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆32Updated last month
- Gene Absence Presence Identification tool.☆27Updated 9 months ago
- Unified Human Gut Virome Catalog☆41Updated 2 months ago
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated 5 months ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆68Updated 3 weeks ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆43Updated 2 years ago
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆57Updated 7 months ago
- A workflow and scripts for large-scale antiSMASH analyses☆46Updated 9 months ago
- Automatic eukaryotic taxonomic classification☆29Updated 8 months ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆62Updated 2 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆54Updated last year
- Prophage Activity Estimator☆30Updated last year
- Calculate assocations between genes and traits☆29Updated 10 months ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆54Updated 2 months ago
- IslandPath standalone software☆35Updated 2 years ago
- Tool to estimate genome quality of microbial eukaryotes☆38Updated 5 months ago
- A python library for predicting phage lifestyle based on genome sequence☆38Updated 2 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆40Updated 3 years ago
- ARG normalization by mapping to the ARO ontology.☆62Updated 5 months ago
- A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.☆49Updated 3 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆35Updated 2 years ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- ☆81Updated last month
- post processing of bacterial pangenome gene presence/absence matrices☆63Updated this week