Kalan-Lab / zolLinks
zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
☆62Updated 2 weeks ago
Alternatives and similar repositories for zol
Users that are interested in zol are comparing it to the libraries listed below
Sorting:
- Bacterial GWAS analysis☆43Updated last month
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated last month
- Calculate assocations between genes and traits☆25Updated 6 months ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆60Updated 5 months ago
- Discover and annotate the virome☆49Updated 3 weeks ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆30Updated 10 months ago
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated last month
- BEAV: Bacterial Element Annotation reVamped☆68Updated last month
- A toolkit for prokaryotic comparative genomics☆50Updated 7 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated last year
- A workflow and scripts for large-scale antiSMASH analyses☆42Updated 5 months ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- ☆53Updated 2 months ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆39Updated 2 years ago
- Improvement of metagenome-assembled genomes☆53Updated 5 years ago
- Automatic eukaryotic taxonomic classification☆28Updated 4 months ago
- KEGG Module Evaluation Tool☆31Updated last year
- Unified Human Gut Virome Catalog☆36Updated last week
- MAG Circularization Method☆32Updated 3 years ago
- post processing of bacterial pangenome gene presence/absence matrices☆61Updated 6 months ago
- A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concat…☆59Updated 8 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆48Updated 2 weeks ago
- ARG normalization by mapping to the ARO ontology.☆58Updated last month
- Gene Absence Presence Identification tool.☆27Updated 5 months ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 5 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆37Updated 3 years ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- GTDB taxonomy taxdump files with trackable TaxIds☆55Updated 4 months ago
- Tool to estimate genome quality of microbial eukaryotes☆37Updated last month
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆52Updated 3 months ago