salzberg-lab / Balrog
Bacterial Annotation by Learned Representation of Genes
☆55Updated 4 years ago
Alternatives and similar repositories for Balrog:
Users that are interested in Balrog are comparing it to the libraries listed below
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 2 years ago
- Universal and efficient core gene phylogeny with Foldseek and ProstT5☆55Updated this week
- Pipeline for major biological analyses.☆34Updated 3 years ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated last week
- a python package for automated generation of phylogenetic trees from genbank files☆21Updated last month
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆39Updated 2 years ago
- BiG-MEx implementation as Docker images and R packages☆13Updated 3 years ago
- ☆19Updated 2 years ago
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- ☆45Updated last year
- Protein Alignment and Detection Interface☆61Updated last year
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆47Updated 2 months ago
- A workflow and scripts for large-scale antiSMASH analyses☆39Updated last week
- PHANOTATE: a tool to annotate phage genomes.☆73Updated 4 months ago
- Influenza genome analysis Nextflow workflow☆26Updated last week
- A package to annotate protein sequences☆56Updated last month
- ☆31Updated 3 years ago
- Nail is an Alignment Inference tooL☆45Updated last week
- Improved Inference of Ortholog Groups using Hidden Markov Models☆33Updated last month
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆27Updated this week
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆37Updated 3 months ago
- Follow up to Grace Blackwell's 661k dataset, for 2023☆96Updated this week
- Strain Resolution ON Graphs☆47Updated last year
- BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a f…☆34Updated 6 years ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆36Updated last month
- Find Unique genomic Regions☆29Updated 2 weeks ago
- ☆28Updated 4 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Python tool to reduce size and redundancy of phylogenetic datasets☆35Updated last year
- MFannot is a program for the annotation of mitochondrial and plastid genomes☆21Updated last year