salzberg-lab / BalrogLinks
Bacterial Annotation by Learned Representation of Genes
☆55Updated 4 years ago
Alternatives and similar repositories for Balrog
Users that are interested in Balrog are comparing it to the libraries listed below
Sorting:
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 2 years ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆69Updated 3 weeks ago
- ☆19Updated 2 years ago
- A package to annotate protein sequences☆59Updated 4 months ago
- Python bindings for the TaxonKit library☆41Updated 2 weeks ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆50Updated 5 months ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 2 months ago
- Influenza genome analysis Nextflow workflow☆26Updated 3 months ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆43Updated 6 months ago
- Metaphor: a general-purpose workflow for assembly and binning of metagenomes☆39Updated 8 months ago
- Pipeline for major biological analyses.☆35Updated 3 years ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆87Updated last month
- Reference-guided multiple sequence alignment of viral genomes☆69Updated last month
- Improved Inference of Ortholog Groups using Hidden Markov Models☆35Updated 4 months ago
- AMBER: Assessment of Metagenome BinnERs☆31Updated 6 months ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆27Updated 3 months ago
- BiG-MEx implementation as Docker images and R packages☆13Updated 3 years ago
- Protein Alignment and Detection Interface☆61Updated last year
- UFCG: Universal Fungal Core Genes☆34Updated 5 months ago
- PaperBLAST: find papers about a protein or its homologs☆40Updated this week
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆39Updated 2 years ago
- A simple command-line tool to download data from Joint Genome Institute databases☆52Updated 2 years ago
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆53Updated 2 weeks ago
- Strain Resolution ON Graphs☆48Updated last year
- a python package for automated generation of phylogenetic trees from genbank files☆22Updated 4 months ago
- A curated database of completed assemblies with taxonomy IDs☆45Updated 6 months ago
- ☆39Updated last month
- ☆30Updated 6 months ago
- ☆31Updated 3 years ago
- Nail is an Alignment Inference tooL☆49Updated last week