salzberg-lab / BalrogLinks
Bacterial Annotation by Learned Representation of Genes
☆58Updated 4 years ago
Alternatives and similar repositories for Balrog
Users that are interested in Balrog are comparing it to the libraries listed below
Sorting:
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 2 years ago
- A package to annotate protein sequences☆59Updated 6 months ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆75Updated 3 months ago
- ☆19Updated 2 years ago
- Python bindings for the TaxonKit library☆40Updated 2 months ago
- Protein Alignment and Detection Interface☆60Updated last year
- Reference-guided multiple sequence alignment of viral genomes☆70Updated 3 months ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆64Updated 2 months ago
- Metaphor: a general-purpose workflow for assembly and binning of metagenomes☆39Updated 10 months ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 5 months ago
- Strain Resolution ON Graphs☆47Updated 2 years ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated last week
- a python package for automated generation of phylogenetic trees from genbank files☆22Updated 6 months ago
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆39Updated 2 years ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆50Updated 7 months ago
- BiG-MEx implementation as Docker images and R packages☆13Updated 3 years ago
- Pipeline for major biological analyses.☆35Updated 3 years ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆89Updated 3 months ago
- Learning and Aligning Large Protein Families with support of protein language models.☆27Updated 2 weeks ago
- ☆39Updated 3 months ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆41Updated last month
- A workflow and scripts for large-scale antiSMASH analyses☆42Updated 5 months ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆47Updated 8 months ago
- ☆51Updated 4 months ago
- Nail is an Alignment Inference tooL☆52Updated last week
- ☆45Updated 2 years ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆28Updated 5 months ago
- Scalable creating/updating of metagenome profiling databases☆62Updated 2 months ago
- UFCG: Universal Fungal Core Genes☆34Updated last month
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago