salzberg-lab / BalrogView external linksLinks
Bacterial Annotation by Learned Representation of Genes
☆59Jan 22, 2021Updated 5 years ago
Alternatives and similar repositories for Balrog
Users that are interested in Balrog are comparing it to the libraries listed below
Sorting:
- A tool for removing redundant genomes from a set of assemblies☆78Sep 10, 2025Updated 5 months ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Mar 8, 2024Updated last year
- Bifrost graph gene caller.☆98Jan 20, 2026Updated 3 weeks ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆290Feb 3, 2026Updated last week
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Mar 12, 2024Updated last year
- Rapid determination of appropriate reference genomes.☆99Jan 22, 2025Updated last year
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 2 years ago
- Viroid-like circRNA discovery and analysis suite☆18Nov 11, 2023Updated 2 years ago
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Updated this week
- frame-shift correction for long-read (meta)genomics☆33Dec 11, 2023Updated 2 years ago
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆103Updated this week
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆176Jan 7, 2026Updated last month
- Population genetics analysis on VG☆17Apr 22, 2021Updated 4 years ago
- ☆17Oct 7, 2024Updated last year
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆105Jan 22, 2026Updated 3 weeks ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- Space-efficient pseudoalignment with a colored de Bruijn graph☆52Mar 13, 2025Updated 11 months ago
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆21Dec 9, 2025Updated 2 months ago
- Neptune: Genomic Signature Discovery☆21Nov 20, 2024Updated last year
- Reference-guided multiple sequence alignment of viral genomes☆70Nov 6, 2025Updated 3 months ago
- Assemble bacterial isolate genomes from Nanopore reads☆127Jan 22, 2025Updated last year
- Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments☆108Dec 11, 2023Updated 2 years ago
- Next Index to Query Kmer Intersection☆17Feb 1, 2023Updated 3 years ago
- Simulate mutations in genomes☆15Jun 15, 2020Updated 5 years ago
- Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.☆70Jun 17, 2024Updated last year
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆21Jul 8, 2024Updated last year
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Nov 19, 2025Updated 2 months ago
- Iterative Gene clUster Analysis, a high-throughput method for gene cluster family identification.☆17Jan 31, 2026Updated last week
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…☆13Feb 13, 2023Updated 3 years ago
- A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers☆22Nov 22, 2019Updated 6 years ago
- Follow up to Grace Blackwell's 661k dataset, for 2023☆130Updated this week
- modular k-mer count matrix and Bloom filter construction for large read collections☆86Dec 15, 2025Updated last month
- Bonsai: Fast, flexible taxonomic analysis and classification☆70Apr 9, 2024Updated last year
- Genome size estimation from long read overlaps☆80Dec 1, 2025Updated 2 months ago
- Remove human reads from a sequencing run☆47Dec 16, 2025Updated last month
- geNomad: Identification of mobile genetic elements☆286Nov 10, 2025Updated 3 months ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 2 years ago
- ☆24Aug 25, 2025Updated 5 months ago