Bacterial Operon Finder for Functional Organization
☆15Nov 14, 2023Updated 2 years ago
Alternatives and similar repositories for octapus
Users that are interested in octapus are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- mGEMS Genomic epidemiology with mixed samples☆15Sep 4, 2024Updated last year
- Masks recombinant regions in an alignment based on ClonalFrameML output☆10May 18, 2018Updated 8 years ago
- Tool for visualising viral lineages in space and time. As seen on covid19.sanger.ac.uk and covglobe.org.☆10Jul 22, 2022Updated 3 years ago
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆12Jan 23, 2026Updated 4 months ago
- Build a map of genes present across a set of microbial genomes☆18Jan 23, 2026Updated 4 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A workflow and scripts for large-scale antiSMASH analyses☆49Apr 3, 2025Updated last year
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆40Apr 20, 2026Updated last month
- Finding prophage regions in bacterial genomes using brute force☆22Jan 20, 2023Updated 3 years ago
- Accurate, resource-frugal and deterministic DNA sequence classifier.☆36May 1, 2026Updated 3 weeks ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Oct 20, 2023Updated 2 years ago
- Functional Analysis of Metagenomes by Likelihood Inference☆17Sep 8, 2025Updated 8 months ago
- Nanomotif - a tool for identifying methylated motifs in metagenomic samples☆35Apr 10, 2026Updated last month
- Fast and flexible tool for reading, modifying and writing biological sequences☆19Feb 4, 2026Updated 3 months ago
- the toolbox for Microbial and personalized GEM, REactiobiome and community NEtwork modelling☆11Feb 3, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆40Apr 6, 2026Updated last month
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆18Nov 24, 2025Updated 6 months ago
- De novo genome assembler.☆12Jul 30, 2018Updated 7 years ago
- CREST - Classification Resources for Environmnetal Sequence Tags, is a collection of software and databases for taxonomic classification …☆12Mar 20, 2022Updated 4 years ago
- Systematic ProtEin AnnotatoR☆19Sep 20, 2025Updated 8 months ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆21Nov 15, 2022Updated 3 years ago
- A repo to reproduce the experiments in the YACHT manuscript☆12Nov 2, 2023Updated 2 years ago
- A multi-algorithmic framework for phylogenetic inference☆14Nov 28, 2025Updated 6 months ago
- A toolkit for prokaryotic comparative genomics☆52Feb 23, 2026Updated 3 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Repository for "Nearest neighbor search on embeddings rapidly identifies distant protein relations"☆13Apr 2, 2023Updated 3 years ago
- Finding regions of similarity between plasmids☆17Nov 2, 2022Updated 3 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71May 20, 2026Updated last week
- Detect contigs of complete circular genomes☆23Jun 6, 2019Updated 6 years ago
- An experimental package for deep learning for molecular docking☆21Mar 21, 2020Updated 6 years ago
- A database for signatures of public genomic sources☆18Jan 1, 2026Updated 4 months ago
- ☆32Sep 21, 2023Updated 2 years ago
- ☆23May 8, 2023Updated 3 years ago
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, prophage, etc.) relative to the…☆13Jan 19, 2026Updated 4 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Feb 15, 2021Updated 5 years ago
- ☆55May 5, 2025Updated last year
- Read contamination removal☆25Jan 24, 2024Updated 2 years ago
- ☆58Jan 16, 2026Updated 4 months ago
- Alignment algorithm for short Illumina reads to a de Bruijn graph☆17Jun 4, 2019Updated 6 years ago
- app to collapse Pango lineages for reporting☆13Dec 9, 2025Updated 5 months ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆39Sep 22, 2025Updated 8 months ago