Bacterial Operon Finder for Functional Organization
☆15Nov 14, 2023Updated 2 years ago
Alternatives and similar repositories for octapus
Users that are interested in octapus are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- mGEMS Genomic epidemiology with mixed samples☆15Sep 4, 2024Updated last year
- Masks recombinant regions in an alignment based on ClonalFrameML output☆10May 18, 2018Updated 7 years ago
- Tool for visualising viral lineages in space and time. As seen on covid19.sanger.ac.uk and covglobe.org.☆10Jul 22, 2022Updated 3 years ago
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Jan 23, 2026Updated 2 months ago
- Build a map of genes present across a set of microbial genomes☆18Jan 23, 2026Updated 2 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A workflow and scripts for large-scale antiSMASH analyses☆48Apr 3, 2025Updated 11 months ago
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆38Mar 25, 2025Updated last year
- Finding prophage regions in bacterial genomes using brute force☆22Jan 20, 2023Updated 3 years ago
- Accurate, resource-frugal and deterministic DNA sequence classifier.☆36Mar 4, 2026Updated 3 weeks ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Oct 20, 2023Updated 2 years ago
- Functional Analysis of Metagenomes by Likelihood Inference☆17Sep 8, 2025Updated 6 months ago
- Nanomotif - a tool for identifying methylated motifs in metagenomic samples☆35Mar 17, 2026Updated last week
- Fast and flexible tool for reading, modifying and writing biological sequences☆18Feb 4, 2026Updated last month
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆38Jan 22, 2026Updated 2 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- the toolbox for Microbial and personalized GEM, REactiobiome and community NEtwork modelling☆11Feb 3, 2024Updated 2 years ago
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆17Nov 24, 2025Updated 4 months ago
- De novo genome assembler.☆11Jul 30, 2018Updated 7 years ago
- CREST - Classification Resources for Environmnetal Sequence Tags, is a collection of software and databases for taxonomic classification …☆12Mar 20, 2022Updated 4 years ago
- Validate and submit reads using Webin-CLI in batch.☆12Aug 3, 2023Updated 2 years ago
- Systematic ProtEin AnnotatoR☆19Sep 20, 2025Updated 6 months ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆20Nov 15, 2022Updated 3 years ago
- A repo to reproduce the experiments in the YACHT manuscript☆11Nov 2, 2023Updated 2 years ago
- A multi-algorithmic framework for phylogenetic inference☆14Nov 28, 2025Updated 4 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A toolkit for prokaryotic comparative genomics☆51Feb 23, 2026Updated last month
- Repository for "Nearest neighbor search on embeddings rapidly identifies distant protein relations"☆13Apr 2, 2023Updated 2 years ago
- Finding regions of similarity between plasmids☆17Nov 2, 2022Updated 3 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71Mar 9, 2026Updated 3 weeks ago
- Detect contigs of complete circular genomes☆23Jun 6, 2019Updated 6 years ago
- ☆46Jan 16, 2026Updated 2 months ago
- A database for signatures of public genomic sources☆18Jan 1, 2026Updated 2 months ago
- ☆30Sep 21, 2023Updated 2 years ago
- ☆23May 8, 2023Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Feb 15, 2021Updated 5 years ago
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, prophage, etc.) relative to the…☆13Jan 19, 2026Updated 2 months ago
- ☆53May 5, 2025Updated 10 months ago
- Read contamination removal☆25Jan 24, 2024Updated 2 years ago
- Alignment algorithm for short Illumina reads to a de Bruijn graph☆17Jun 4, 2019Updated 6 years ago
- app to collapse Pango lineages for reporting☆13Dec 9, 2025Updated 3 months ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆39Sep 22, 2025Updated 6 months ago