tyjo / coptrLinks
Accurate and robust inference of microbial growth dynamics from metagenomic sequencing
☆19Updated 3 years ago
Alternatives and similar repositories for coptr
Users that are interested in coptr are comparing it to the libraries listed below
Sorting:
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆48Updated last week
- A workflow and scripts for large-scale antiSMASH analyses☆42Updated 5 months ago
- Automatic eukaryotic taxonomic classification☆28Updated 4 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆25Updated this week
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated last year
- MAGScoT - a MAG scoring and refinement tool☆36Updated 11 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 4 months ago
- Bacterial GWAS analysis☆43Updated last month
- Classify metagenomic contigs as eukaryotic or prokaryotic☆39Updated 2 years ago
- A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.☆39Updated this week
- ☆24Updated 7 months ago
- ☆27Updated 7 months ago
- Microbial agile accurate SNP Typer☆29Updated last year
- ☆16Updated 4 months ago
- ☆26Updated 2 years ago
- Calculate assocations between genes and traits☆25Updated 6 months ago
- Prophage Activity Estimator☆26Updated last year
- KEGG Module Evaluation Tool☆31Updated last year
- A Hierarchical Approach to Pangenomics Inference☆11Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆25Updated 3 years ago
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆23Updated 2 years ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆46Updated 6 months ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 5 months ago
- Discover and annotate the virome☆49Updated 3 weeks ago
- MAG Circularization Method☆32Updated 3 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆62Updated last week
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆21Updated 9 months ago
- Population genomics from metagenomes☆12Updated last year