Accurate and robust inference of microbial growth dynamics from metagenomic sequencing
☆20May 11, 2022Updated 4 years ago
Alternatives and similar repositories for coptr
Users that are interested in coptr are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆56Mar 29, 2026Updated 5 months ago
- Strain-level Metagenomic Estimation of Growth rate (SMEG) measures growth rates of microbial strains from complex metagenomic dataset☆21May 22, 2020Updated 6 years ago
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆15Dec 7, 2021Updated 4 years ago
- snapper☆14Jul 8, 2024Updated 2 years ago
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆34Nov 2, 2025Updated 9 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆21Mar 15, 2023Updated 3 years ago
- Plot microbiome time series in parallel☆27Nov 7, 2023Updated 2 years ago
- Scatterbar - data visualization for proportional data across many spatially resolved coordinates☆12Mar 3, 2025Updated last year
- ☆29Aug 2, 2026Updated 3 weeks ago
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32May 22, 2020Updated 6 years ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆69Mar 16, 2026Updated 5 months ago
- Modeling strain-level variation by gene, phylogeny, or pathway☆13Aug 6, 2026Updated 3 weeks ago
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆24Jul 30, 2026Updated last month
- 🦠🧬🧑💻📇 Microbial genomes-to-report pipeline☆75Mar 14, 2026Updated 5 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- A comprehensive prokaryotic genome annotation pipeline☆91Aug 18, 2026Updated last week
- ☆14Jun 23, 2026Updated 2 months ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆75Dec 28, 2019Updated 6 years ago
- ☆27Jun 20, 2023Updated 3 years ago
- Minimal Microbial Consortia creation tools☆13Jan 28, 2022Updated 4 years ago
- PaperBLAST: find papers about a protein or its homologs☆53Jul 14, 2026Updated last month
- Phasing for metagenomics using PacBio long reads☆16Jul 14, 2021Updated 5 years ago
- MAG Circularization Method☆33Nov 4, 2025Updated 9 months ago
- Metagenomic Binning Algorithm☆55Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- EzAAI - High Throughput Prokaryotic AAI Calculator☆48Feb 5, 2026Updated 6 months ago
- Automatic eukaryotic taxonomic classification☆33May 9, 2025Updated last year
- A hybrid assembly and MAG recovery pipeline (and more!)