ibe-uw / tiaraLinks
tiara – a tool for DNA sequence classification
☆63Updated last year
Alternatives and similar repositories for tiara
Users that are interested in tiara are comparing it to the libraries listed below
Sorting:
- ☆52Updated last week
- A tool for removing redundant genomes from a set of assemblies☆71Updated last year
- EzAAI - High Throughput Prokaryotic AAI Calculator☆42Updated this week
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated last week
- GTDB taxonomy taxdump files with trackable TaxIds☆55Updated 2 months ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆70Updated 2 weeks ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- post processing of bacterial pangenome gene presence/absence matrices☆60Updated 4 months ago
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 2 years ago
- Tool to estimate genome quality of microbial eukaryotes☆38Updated 5 months ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆84Updated 2 months ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆59Updated 2 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆32Updated 2 years ago
- Prediction of prophages from bacterial genomes☆78Updated last month
- Improvement of metagenome-assembled genomes☆53Updated 5 years ago
- whole genome MLST analysis☆45Updated last month
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆46Updated last week
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆49Updated last month
- ☆25Updated 6 years ago
- ☆55Updated last year
- Microbial Populations as Clusters Of Gene Transfer☆44Updated last year
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆74Updated last year
- ☆56Updated last year
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆59Updated last year
- IS mapping software☆54Updated 3 years ago
- IslandPath standalone software☆32Updated last year
- a collection of scripts for organising bacterial genomes by species☆76Updated 3 years ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆72Updated 2 weeks ago