Metaphor: a general-purpose workflow for assembly and binning of metagenomes
☆40Nov 14, 2025Updated 10 months ago
Alternatives and similar repositories for metaphor
Users that are interested in metaphor are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A provenance library for bioinformatics workflows 🧬 🔀 📝☆14Jun 2, 2026Updated 3 months ago
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆17Nov 24, 2025Updated 10 months ago
- scripts for microbiome analysis☆12Jul 25, 2024Updated 2 years ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆323Sep 15, 2026Updated last week
- ☆17May 22, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆12Mar 29, 2025Updated last year
- Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-…☆42Sep 16, 2026Updated last week
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆86Sep 7, 2026Updated 2 weeks ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆72Aug 27, 2026Updated last month
- Bacterial GWAS analysis☆58Jun 12, 2026Updated 3 months ago
- Integrative virome pipeline☆14Nov 4, 2024Updated last year
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆264May 13, 2026Updated 4 months ago
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆95May 11, 2026Updated 4 months ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Jan 29, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- Finding prophage regions in bacterial genomes using brute force☆22Jan 20, 2023Updated 3 years ago
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆189Mar 17, 2026Updated 6 months ago
- AMBER: Assessment of Metagenome BinnERs☆34Jun 23, 2026Updated 3 months ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆342Updated this week
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆111Sep 12, 2026Updated 2 weeks ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆57May 8, 2026Updated 4 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆64Sep 1, 2026Updated 3 weeks ago
- R package for searching, downloading and analysis of EBI MGnify metagenomics data☆23Feb 13, 2026Updated 7 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆25Mar 19, 2023Updated 3 years ago
- geNomad: Identification of mobile genetic elements☆334Mar 29, 2026Updated 5 months ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆101Mar 12, 2026Updated 6 months ago
- Microbiome classification pipeline☆68Updated this week
- PipeTaxon exposes the ncbi taxonomy database as a REST API.☆22Feb 15, 2023Updated 3 years ago
- Read contamination removal☆25Jan 24, 2024Updated 2 years ago
- A comprehensive prokaryotic genome annotation pipeline☆93Sep 4, 2026Updated 3 weeks ago
- MAGqual is a command line tool to evaluate the quality of metagenomic bins and generate recommended metadata in line with the MIMAG stand…☆16Aug 28, 2024Updated 2 years ago
- Binning Virus Genomes from Metagenomes☆76Jul 13, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Classify metagenomic contigs as eukaryotic or prokaryotic☆46Feb 17, 2023Updated 3 years ago
- frame-shift correction for long-read (meta)genomics☆33Dec 11, 2023Updated 2 years ago
- ☆12Dec 22, 2025Updated 9 months ago
- SemiBin: metagenomics binning with self-supervised deep learning☆175Sep 20, 2026Updated last week
- A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…☆106Jul 14, 2026Updated 2 months ago
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆69Aug 28, 2026Updated last month
- A repo to reproduce the experiments in the YACHT manuscript☆12Nov 2, 2023Updated 2 years ago