Metaphor: a general-purpose workflow for assembly and binning of metagenomes
β40Nov 14, 2025Updated 9 months ago
Alternatives and similar repositories for metaphor
Users that are interested in metaphor are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A provenance library for bioinformatics workflows 𧬠π πβ14Jun 2, 2026Updated 3 months ago
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insightsβ17Nov 24, 2025Updated 9 months ago
- scripts for microbiome analysisβ12Jul 25, 2024Updated 2 years ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.β318Feb 3, 2026Updated 7 months ago
- β17May 22, 2023Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI β’ AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- β12Mar 29, 2025Updated last year
- Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-β¦β42Apr 7, 2026Updated 5 months ago
- π«§π§¬ From fragmented assemblies to high-quality bacteriophage genomesβ86Aug 24, 2026Updated 2 weeks ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)β72Aug 27, 2026Updated last week
- Bacterial GWAS analysisβ58Jun 12, 2026Updated 2 months ago
- Integrative virome pipelineβ14Nov 4, 2024Updated last year
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.β263May 13, 2026Updated 3 months ago
- Python package for detection of chimerism and contamination in prokaryotic genomes.β94May 11, 2026Updated 3 months ago
- Strain-level abundances estimation in metagenomic samples using variation graphsβ25Jan 29, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Mapping NCBI Genbank accession to GTDB accessionβ14Feb 13, 2021Updated 5 years ago
- Finding prophage regions in bacterial genomes using brute forceβ22Jan 20, 2023Updated 3 years ago
- A hybrid assembly and MAG recovery pipeline (and more!)β118Sep 1, 2026Updated last week
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!β190Mar 17, 2026Updated 5 months ago
- AMBER: Assessment of Metagenome BinnERsβ33Jun 23, 2026Updated 2 months ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomesβ339Aug 16, 2026Updated 3 weeks ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomesβ111Jul 7, 2026Updated 2 months ago
- alignment-free coverage calculation for metagenomic binning >100 times fasterβ56May 8, 2026Updated 3 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.β62Updated this week
- AI Agents on DigitalOcean Gradient AI Platform β’ AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- R package for searching, downloading and analysis of EBI MGnify metagenomics dataβ23Feb 13, 2026Updated 6 months ago
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGsβ25Mar 19, 2023Updated 3 years ago
- geNomad: Identification of mobile genetic elementsβ330Mar 29, 2026Updated 5 months ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5β91Mar 12, 2026Updated 5 months ago
- Microbiome classification pipelineβ67May 13, 2025Updated last year
- PipeTaxon exposes the ncbi taxonomy database as a REST API.β22Feb 15, 2023Updated 3 years ago
- Read contamination removalβ25Jan 24, 2024Updated 2 years ago
- A comprehensive prokaryotic genome annotation pipelineβ93Updated this week
- MAGqual is a command line tool to evaluate the quality of metagenomic bins and generate recommended metadata in line with the MIMAG standβ¦β16Aug 28, 2024Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI β’ AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Binning Virus Genomes from Metagenomesβ76Jul 13, 2022Updated 4 years ago
- Classify metagenomic contigs as eukaryotic or prokaryoticβ46Feb 17, 2023Updated 3 years ago
- frame-shift correction for long-read (meta)genomicsβ33Dec 11, 2023Updated 2 years ago
- SemiBin: metagenomics binning with self-supervised deep learningβ174Aug 3, 2026Updated last month
- β12Dec 22, 2025Updated 8 months ago
- A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metagβ¦β107Jul 14, 2026Updated last month
- π¦π§¬ Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphsβ69Aug 28, 2026Updated last week