iqbal-lab-org / simutatorLinks
Simulate mutations in genomes
☆15Updated 5 years ago
Alternatives and similar repositories for simutator
Users that are interested in simutator are comparing it to the libraries listed below
Sorting:
- Robust individual and aggregate checksums for nucleotide sequences☆17Updated last year
- Variant call verification☆16Updated 2 months ago
- Variant call adjudication☆16Updated last year
- Indel-aware consensus for aligned BAM☆21Updated 4 months ago
- software to identify primers that can distinguish genomes☆21Updated 6 months ago
- Read contamination removal☆25Updated last year
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 4 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆21Updated 4 months ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Updated 6 years ago
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆11Updated last year
- Hierarchical binned indexed data store for on-disk genomic data.☆14Updated 6 months ago
- Embedding-based indexing for compact storage, rapid querying, and curation of bacterial pan-genomes☆11Updated last week
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 3 years ago
- de Bruijn graph cOrrectiOn from graph aLignment☆11Updated 5 years ago
- Visualize microbial evolution at the SNP level!☆15Updated 2 months ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 7 years ago
- Nanopore read de-multiplexer☆13Updated 5 years ago
- Mapping NCBI Genbank accession to GTDB accession☆14Updated 4 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated 2 years ago
- Assembly and scaffolding of bacterial genomes in real time using MinION-sequencing☆9Updated 7 years ago
- De novo VIral Genome Annotator☆23Updated 10 months ago
- Basecalling configuration prediction through FASTQ files☆21Updated 2 months ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Updated last year
- Simple-to-use interactive comparison of two bacterial genomes☆16Updated last month
- Hidden Markov Model based Copy number caller☆20Updated 9 months ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)☆15Updated 4 years ago
- ☆15Updated last year
- Tool for exploring sequence alignment algorithms☆13Updated 11 months ago
- Next Index to Query Kmer Intersection☆16Updated 2 years ago