iqbal-lab-org / simutator
Simulate mutations in genomes
☆15Updated 4 years ago
Alternatives and similar repositories for simutator:
Users that are interested in simutator are comparing it to the libraries listed below
- Robust individual and aggregate checksums for nucleotide sequences☆16Updated last year
- Variant call adjudication☆16Updated 9 months ago
- Variant call verification☆16Updated 2 months ago
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆11Updated 9 months ago
- De novo VIral Genome Annotator☆21Updated 6 months ago
- Embedding-based indexing for compact storage, rapid querying, and curation of bacterial pan-genomes☆9Updated 2 weeks ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated last year
- software to identify primers that can distinguish genomes☆21Updated 2 months ago
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 2 years ago
- a Rust crate for working with a local copy of the NCBI Taxonomy database☆10Updated 2 years ago
- k-mers and the like☆21Updated last week
- transposable element typing pipeline☆17Updated last year
- Iterate k-min-mers from a DNA sequence in Rust☆13Updated 11 months ago
- Nanopore read de-multiplexer☆13Updated 5 years ago
- Hidden Markov Model based Copy number caller☆20Updated 5 months ago
- Indel-aware consensus for aligned BAM☆21Updated 3 months ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated 3 months ago
- Non-redundant pangenome assemblies from multiple genomes or bins☆13Updated last month
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Updated 6 years ago
- Rapid discovery of reciprocal best blast pairs.☆10Updated 4 months ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆20Updated 4 months ago
- MetagenOmic read Re-Assigner and abundance quantifier☆18Updated 2 months ago
- Utilities to detect and profile `het-kmers`☆11Updated 7 months ago
- Organism-specific interpretation of AMR genotypes☆10Updated last year
- Read contamination removal☆25Updated last year
- Extracts subgraphs or components from a graph in GFA format☆23Updated 4 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆29Updated 3 months ago
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Updated 3 years ago
- Paint genomes with taxa-specific k-mer probabilities☆8Updated 7 years ago
- Visualize microbial evolution at the SNP level!☆14Updated 4 months ago