Alternatives and similar repositories for simutator

Users that are interested in simutator are comparing it to the libraries listed below

• bede / seqsum
  Robust individual and aggregate checksums for nucleotide sequences
  ☆17Updated last year
• iqbal-lab-org / varifier
  Variant call verification
  ☆16Updated 6 months ago
• iqbal-lab-org / minos
  Variant call adjudication
  ☆16Updated last year
• GlobalPathogenAnalysisService / read-it-and-keep
  Read contamination removal
  ☆25Updated last year
• sanger-pathogens / panito
  Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment
  ☆16Updated 6 years ago
• rchikhi / rust-seq2kminmers
  Iterate k-min-mers from a DNA sequence in Rust
  ☆13Updated last year
• shenwei356 / ncbi_acc2gtdb_acc
  Mapping NCBI Genbank accession to GTDB accession
  ☆13Updated 4 years ago
• pg-space / panspace
  Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes
  ☆13Updated last week
• bede / kindel
  Indel-aware consensus for aligned BAM
  ☆21Updated 3 months ago
• artic-network / readucks
  Nanopore read de-multiplexer
  ☆13Updated 5 years ago
• prophyle / prophasm
  ProphAsm – a rapid computation of simplitigs directly from k-mer sets
  ☆25Updated 2 years ago
• jfass / apc
  (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join
  ☆11Updated 4 years ago
• ChaissonLab / hmcnc
  Hidden Markov Model based Copy number caller
  ☆20Updated last year
• dr-joe-wirth / primerForge
  software to identify primers that can distinguish genomes
  ☆20Updated 3 weeks ago
• scwatts / genome_painter
  Paint genomes with taxa-specific k-mer probabilities
  ☆15Updated 3 years ago
• pierrepeterlongo / kmer2sequences
  Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.
  ☆21Updated 2 years ago
• Malfoy / NIQKI
  Next Index to Query Kmer Intersection
  ☆16Updated 2 years ago
• vsbuffalo / hgindex
  Hierarchical binned indexed data store for on-disk genomic data.
  ☆13Updated 10 months ago
• mbhall88 / tbpore
  Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data
  ☆12Updated last year
• richarddurbin / syng
  syncmer graphs, and perhaps other sorts of sequence graphs
  ☆23Updated last week
• mreppell / Karp
  Accurate and fast taxonomic classification using pseudoaligning
  ☆21Updated 8 years ago
• algbio / matchtigs
  Minimum plain text representation of kmer sets
  ☆16Updated 9 months ago
• Malfoy / BCOOL
  de Bruijn graph cOrrectiOn from graph aLignment
  ☆11Updated 5 years ago
• marbl / MetagenomeScope
  Visualization tool for (meta)genome assembly graphs
  ☆22Updated this week
• edawson / mkmh
  Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.
  ☆24Updated 4 years ago
• EGTortuero / viga
  De novo VIral Genome Annotator
  ☆23Updated last year
• edawson / svaha2
  Linear-time, low-memory construction of variation graphs
  ☆20Updated 5 years ago
• phiweger / uv
  Finding prophage regions in bacterial genomes using brute force
  ☆21Updated 2 years ago
• DaehwanKimLab / seqwho
  SeqWho - A reliable and rapid FASTQ(A) file classifier
  ☆10Updated 3 years ago
• salzberg-lab / bolotie
  SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity
  ☆13Updated 2 years ago