iqbal-lab-org / simutatorLinks
Simulate mutations in genomes
☆15Updated 4 years ago
Alternatives and similar repositories for simutator
Users that are interested in simutator are comparing it to the libraries listed below
Sorting:
- Robust individual and aggregate checksums for nucleotide sequences☆16Updated last year
- Variant call adjudication☆16Updated 11 months ago
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 3 years ago
- Variant call verification☆16Updated 3 weeks ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated last year
- software to identify primers that can distinguish genomes☆21Updated 4 months ago
- Embedding-based indexing for compact storage, rapid querying, and curation of bacterial pan-genomes☆10Updated last month
- Assembly and scaffolding of bacterial genomes in real time using MinION-sequencing☆9Updated 7 years ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Updated 6 years ago
- De novo VIral Genome Annotator☆21Updated 8 months ago
- Paint genomes with taxa-specific k-mer probabilities☆8Updated 7 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆20Updated 2 months ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Updated last year
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆11Updated 11 months ago
- Non-redundant pangenome assemblies from multiple genomes or bins☆13Updated 3 weeks ago
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Updated 4 years ago
- Read contamination removal☆25Updated last year
- Hidden Markov Model based Copy number caller☆20Updated 7 months ago
- Next Index to Query Kmer Intersection☆16Updated 2 years ago
- Visualize microbial evolution at the SNP level!☆14Updated 3 weeks ago
- Finding prophage regions in bacterial genomes using brute force☆22Updated 2 years ago
- Indel-aware consensus for aligned BAM☆21Updated 2 months ago
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆12Updated 9 months ago
- Basecalling configuration prediction through FASTQ files☆19Updated 2 weeks ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated 6 months ago
- Rapid discovery of reciprocal best blast pairs.☆10Updated 6 months ago
- Nanopore read de-multiplexer☆13Updated 5 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated 2 years ago
- de Bruijn graph cOrrectiOn from graph aLignment☆11Updated 4 years ago
- MetagenOmic read Re-Assigner and abundance quantifier☆19Updated 4 months ago