ablab / nerpaLinks
☆17Updated 10 months ago
Alternatives and similar repositories for nerpa
Users that are interested in nerpa are comparing it to the libraries listed below
Sorting:
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, prophage, etc.) relative to the…☆13Updated 3 weeks ago
- Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases☆24Updated 3 years ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆30Updated 9 months ago
- Pipeline to apply encoded Kmer analysis to protein sequences☆16Updated last week
- GCsnap: interactive snapshots for the comparison of protein-coding genomic contexts☆34Updated last year
- ☆31Updated 4 years ago
- Nail is an Alignment Inference tooL☆55Updated last week
- Fast implementation of KofamScan optimized for high-memory systems using PyHMMER☆17Updated 3 weeks ago
- Bacterial Annotation by Learned Representation of Genes☆59Updated 5 years ago
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆20Updated last year
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆82Updated 2 months ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆27Updated 2 years ago
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated 3 months ago
- Bacterial Operon Finder for Functional Organization☆15Updated 2 years ago
- Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.☆23Updated last year
- ☆14Updated last week
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆24Updated 3 months ago
- Python bindings for the TaxonKit library☆43Updated last week
- A pipeline based on EMU, a taxonomic profiler optimized for long 16S rRNA reads.☆18Updated last month
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆21Updated last year
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆20Updated 2 months ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆51Updated last year
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes☆21Updated 2 months ago
- Easy-to-use web application for visualization and comparison of genomes in Genbank file☆22Updated 3 years ago
- HMmer Based UndeRstandinG of gene clustERs☆15Updated this week
- ☆52Updated 9 months ago
- Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!☆27Updated 2 months ago
- Protein Sequence Annotation with Language Models☆27Updated 2 weeks ago
- Machine learning for accurate identification and classification of CRISPR-Cas systems☆23Updated last year
- Manipulate and generate figures for trees in Newick format☆22Updated 6 months ago