PAiewsakun / GRAViTy
☆17Updated 2 years ago
Alternatives and similar repositories for GRAViTy:
Users that are interested in GRAViTy are comparing it to the libraries listed below
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆18Updated 2 years ago
- ☆29Updated last month
- Unified Human Gut Virome Catalog☆27Updated 8 months ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆37Updated 3 months ago
- Prophage Activity Estimator☆26Updated 9 months ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆26Updated last week
- ☆31Updated last year
- ☆19Updated 3 years ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆33Updated 2 years ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆23Updated 11 months ago
- Bacterial GWAS analysis☆37Updated 2 weeks ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆44Updated 2 weeks ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆39Updated last week
- MAGScoT - a MAG scoring and refinement tool☆32Updated 5 months ago
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆16Updated 7 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆33Updated 3 years ago
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆13Updated 3 years ago
- IslandPath standalone software☆31Updated last year
- RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches☆45Updated 9 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- Gupta et al., TaxiBGC: a Taxonomy-guided Approach for Profiling Experimentally Characterized Microbial Biosynthetic Gene Clusters and Sec…☆15Updated last year
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆34Updated last year
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆18Updated last year
- ☆22Updated last year
- snapper☆14Updated 8 months ago
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆22Updated last week
- Virus Protein Family tools☆29Updated 2 years ago
- Set of utilities on sequences and BAM files☆26Updated 3 years ago
- Hydrocarbon biodegradation gene annotation☆15Updated 2 years ago
- a python package for automated generation of phylogenetic trees from genbank files☆20Updated last week