raw-lab / MetaCerberusLinks
Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focus of shotgun metaomics data
☆65Updated last month
Alternatives and similar repositories for MetaCerberus
Users that are interested in MetaCerberus are comparing it to the libraries listed below
Sorting:
- EzAAI - High Throughput Prokaryotic AAI Calculator☆46Updated this week
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71Updated last month
- post processing of bacterial pangenome gene presence/absence matrices☆63Updated 2 weeks ago
- A toolkit for prokaryotic comparative genomics☆51Updated 3 months ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆83Updated 2 weeks ago
- BEAV: Bacterial Element Annotation reVamped☆73Updated 5 months ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- aweMAGs: a fully automated workflow for eukariotic MAGs☆20Updated 2 years ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆54Updated 3 months ago
- ☆56Updated last week
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆32Updated 2 months ago
- ☆50Updated 2 weeks ago
- IslandPath standalone software☆35Updated 2 years ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- tiara – a tool for DNA sequence classification☆74Updated last year
- Tool to estimate genome quality of microbial eukaryotes☆38Updated 6 months ago
- ☆62Updated last year
- Binning Virus Genomes from Metagenomes☆70Updated 3 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆54Updated last year
- GTDB taxonomy taxdump files with trackable TaxIds☆57Updated 9 months ago
- Bifrost graph gene caller.☆98Updated 2 weeks ago
- Bacterial GWAS analysis☆46Updated 2 weeks ago
- ☆81Updated 2 months ago
- ARG normalization by mapping to the ARO ontology.☆62Updated 6 months ago
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆89Updated last year
- ☆66Updated last year
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆35Updated 2 years ago
- ☆24Updated 7 years ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- A python library for predicting phage lifestyle based on genome sequence☆40Updated 2 years ago