Newick tree processing
☆13Feb 22, 2026Updated last week
Alternatives and similar repositories for nwkit
Users that are interested in nwkit are comparing it to the libraries listed below
Sorting:
- Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit☆11Jan 17, 2020Updated 6 years ago
- Killifish genomics scripts☆12Feb 19, 2021Updated 5 years ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆35Feb 4, 2026Updated last month
- Custom scripts for monotreme genome project☆19Jan 12, 2021Updated 5 years ago
- Gene-tree Reconciliation Algorithm with MUL-trees for Polyploid Analysis☆17Jul 25, 2025Updated 7 months ago
- Annotate Olfactory receptor CDS from genome☆10Apr 29, 2023Updated 2 years ago
- CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.☆23Nov 21, 2023Updated 2 years ago
- Analyzing combinations of codon substitution histories☆46Feb 27, 2026Updated last week
- RNA-seq data amalgamation for a large-scale evolutionary transcriptomics☆12Feb 27, 2026Updated last week
- Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework☆24Nov 29, 2022Updated 3 years ago
- Code for TAD_SV project☆11Mar 16, 2022Updated 3 years ago
- ☆13Nov 15, 2017Updated 8 years ago
- Daily usage script recording☆12Jan 17, 2026Updated last month
- From the comparison of two extant genomes and corresponding gene families, PhylDiag detects conserved segments, i.e. segments of chromoso…☆15Aug 7, 2023Updated 2 years ago
- De-novo Assembly Structural Variant Caller☆13Sep 15, 2016Updated 9 years ago
- Convergent substitution detection tool based on the PCOC model☆31Dec 2, 2021Updated 4 years ago
- Gennome annotation scripts for the crickets Gryllus bimaculatus and Laupala kohalensis.☆13Feb 28, 2022Updated 4 years ago
- General analysis of HiC data, including compartment A/B, domains and loops.☆14Feb 17, 2023Updated 3 years ago
- Scripts and other material for the assembly and analysis of ratite genomes.☆27Jan 18, 2023Updated 3 years ago
- ☆13Jan 20, 2026Updated last month
- Useful bioinformatic scripts☆60Feb 23, 2026Updated last week
- Analysis of convergence between organismal traits and DNA/protein sequences☆63Jan 6, 2026Updated 2 months ago
- Phylogenetic analysis of multi-species genome sequence alignments to identify conserved protein-coding regions☆71Oct 16, 2023Updated 2 years ago
- ☆12Sep 6, 2019Updated 6 years ago
- Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO☆13Oct 30, 2018Updated 7 years ago
- Cantù Lab @ UC Davis - Annotation pipeline - EVM based☆14Nov 1, 2024Updated last year
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Nov 21, 2019Updated 6 years ago
- Scripts for Shi et al. (2024). The suer-pangenome of Populus unveils genomic facets for its adaptation and diversification in widespread …☆18Apr 1, 2024Updated last year
- parallelLastz: Running Lastz in parallel☆17Sep 13, 2024Updated last year
- Invertory of TE-gene isoforms☆14Sep 18, 2023Updated 2 years ago
- Script to help assessing the evolutionary history of a TE family☆16Sep 5, 2019Updated 6 years ago
- Scripts used in the annotation of B10K genomes☆15Jun 1, 2020Updated 5 years ago
- Segmental duplication detection tool☆16Feb 7, 2023Updated 3 years ago
- ☆17Oct 21, 2024Updated last year
- Whole Genome Annotation Pipeline☆16Jun 20, 2025Updated 8 months ago
- Assemble and following pipeline used in wisent genome paper.☆17Dec 23, 2016Updated 9 years ago
- A suite of methods and models for studying evolutionary radiations☆25Feb 22, 2023Updated 3 years ago
- ☆44Nov 6, 2022Updated 3 years ago
- ☆17Feb 16, 2026Updated 2 weeks ago