phyloacc / PhyloAccLinks
PhyloAcc a software to detect the changes of conservation of a genomic region
☆32Updated 3 months ago
Alternatives and similar repositories for PhyloAcc
Users that are interested in PhyloAcc are comparing it to the libraries listed below
Sorting:
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆57Updated 2 years ago
- Analysis of convergence between organismal traits and DNA/protein sequences☆55Updated last week
- A (very) simple script to QC Hi-C data.☆25Updated 7 months ago
- ☆44Updated 8 years ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- Call select base modifications in PacBio HiFi reads☆8Updated 5 months ago
- Portable solution to generate genome alignment chains using lastz☆57Updated last month
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆67Updated 4 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 6 months ago
- ☆76Updated 5 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆68Updated last month
- ☆26Updated 4 months ago
- Tools for improving the sensitivity and specificity of genome alignments☆57Updated last year
- A program to call variants from genome alignment☆81Updated 2 months ago
- A shiny application to visualize MCscan result☆37Updated 2 years ago
- MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation☆71Updated 3 months ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated 8 months ago
- A list of software for pangenomics☆119Updated this week
- meta-pipeline for repetitive element de-fragmentation and annotation☆25Updated 4 years ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆36Updated last year
- Computational Analysis of Gene Expression Evolution☆43Updated last week
- Simple pileup-based variant caller☆91Updated 2 months ago
- Useful bioinformatic scripts☆57Updated 7 months ago
- SRF: Satellite Repeat Finder☆96Updated last year
- Neural network classification of TE☆90Updated last month
- BITACORA: A Bioinformatics tool for gene family annotation☆46Updated last month
- Mapping pipeline for data generated using Arima-HiC☆78Updated last year
- Python wrappers for programs that search for transposable elements☆19Updated 9 years ago
- Scripts and procedures for detecting positively selected genes and codons in primates☆21Updated 4 years ago