PhyloAcc a software to detect the changes of conservation of a genomic region
☆35Feb 4, 2026Updated last month
Alternatives and similar repositories for PhyloAcc
Users that are interested in PhyloAcc are comparing it to the libraries listed below
Sorting:
- Scripts and other material for the assembly and analysis of ratite genomes.☆27Jan 18, 2023Updated 3 years ago
- Convergent substitution detection tool based on the PCOC model☆31Dec 2, 2021Updated 4 years ago
- Analyzing combinations of codon substitution histories☆46Feb 27, 2026Updated last week
- Newick tree processing☆13Feb 22, 2026Updated 2 weeks ago
- The MafFilter genome alignment processor☆19Jan 6, 2026Updated 2 months ago
- Cantù Lab @ UC Davis - Annotation pipeline - EVM based☆14Nov 1, 2024Updated last year
- machine learning applications for dadi☆17Jan 23, 2025Updated last year
- Scripts and procedures for detecting positively selected genes and codons in primates☆22Nov 14, 2020Updated 5 years ago
- Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit☆11Jan 17, 2020Updated 6 years ago
- ☆28Dec 1, 2022Updated 3 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆33Mar 5, 2021Updated 5 years ago
- TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.☆13Mar 5, 2021Updated 5 years ago
- Killifish genomics scripts☆12Feb 19, 2021Updated 5 years ago
- ☆25Nov 29, 2022Updated 3 years ago
- Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework☆24Nov 29, 2022Updated 3 years ago
- tool for dating gene age by micro- and macro-synteny with high speed and accuracy☆15Jan 3, 2026Updated 2 months ago
- issues for semina "Data Visulization"☆13Dec 23, 2025Updated 2 months ago
- Computational Analysis of Gene Expression Evolution☆45Aug 19, 2025Updated 6 months ago
- Analysis of convergence between organismal traits and DNA/protein sequences☆63Jan 6, 2026Updated 2 months ago
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆204Nov 23, 2025Updated 3 months ago
- Phylogenetic analysis of multi-species genome sequence alignments to identify conserved protein-coding regions☆71Oct 16, 2023Updated 2 years ago
- Tools for improving the sensitivity and specificity of genome alignments☆58Jan 17, 2024Updated 2 years ago
- Utilities for analyzing next generation sequencing data.☆15May 7, 2021Updated 4 years ago
- parallelLastz: Running Lastz in parallel☆17Sep 13, 2024Updated last year
- ☆186May 22, 2025Updated 9 months ago
- Scripts used in the annotation of B10K genomes☆15Jun 1, 2020Updated 5 years ago
- ☆17Oct 21, 2024Updated last year
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆33Jun 1, 2022Updated 3 years ago
- Main scripts and commands used to analyze goat population genetic and domestication☆19Mar 25, 2019Updated 6 years ago
- ☆17Nov 9, 2020Updated 5 years ago
- Hierarchical Alignment Format☆174Jan 23, 2026Updated last month
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆35Jan 15, 2025Updated last year
- Custom scripts for monotreme genome project☆19Jan 12, 2021Updated 5 years ago
- Rapid, interactive, probabilistic analysis of convergent molecular evolution☆16Feb 11, 2026Updated 3 weeks ago
- Annotate Olfactory receptor CDS from genome☆10Apr 29, 2023Updated 2 years ago
- ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.☆25Dec 5, 2024Updated last year
- A comprehensive pipeline for RNAseq data analysis☆22Aug 31, 2024Updated last year
- HyPhy: Hypothesis testing using Phylogenies☆250Feb 27, 2026Updated last week
- Best practices and workflow for genome annotation☆79Apr 14, 2025Updated 10 months ago