Alternatives and similar repositories for annotation

Users that are interested in annotation are comparing it to the libraries listed below

• lurebgi / BOPsexChr
  Analyses of sex chromosome evolution in songbirds
  ☆16Updated 6 years ago
• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆36Updated 3 years ago
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆38Updated 3 years ago
• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆42Updated 4 years ago
• carolindahms / TreeMix
  Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…
  ☆42Updated last year
• ComparativeGenomicsToolkit / neutral-model-estimator
  Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit
  ☆11Updated 6 years ago
• heche-psb / wgd
  wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication
  ☆37Updated 11 months ago
• rivasiker / autocoalhmm
  Automated pipeline for running CoalHMM
  ☆13Updated last month
• alachins / sweed
  Likelihood-based Selective Sweep Detection
  ☆40Updated 2 years ago
• A-J-F-Mackintosh / syngraph
  Toolkit for evolutionary analyses of linkage groups
  ☆33Updated last year
• Argonum-Clever2 / mike
  ☆33Updated 10 months ago
• Yandell-Lab / maker
  Genome Annotation Pipeline
  ☆42Updated last year
• wangzihell / IntroBlocker
  The IntroBlocker ancestry inference algorithm
  ☆17Updated 2 years ago
• ellenbell / FasTE
  A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…
  ☆27Updated 3 years ago
• zy-optimistic / GAEP
  A genome assembly assessment pipeline.
  ☆37Updated 2 years ago
• ShiuLab / PseudogenePipeline
  ☆41Updated 2 years ago
• clairemerot / physalia_adaptation_course
  ☆18Updated 2 years ago
• liushoucheng / SPART
  a Semi-automated pipeline for assembling T2T genome
  ☆25Updated 3 months ago
• CMB-BNU / PloidyFrost
  reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph
  ☆18Updated 2 years ago
• LQHHHHH / paml-yn00-run-pipeline
  A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method
  ☆10Updated 11 months ago
• SexGenomicsToolkit / PSASS
  Pooled Sequencing Analysis for Sex Signal
  ☆12Updated 4 years ago
• Kinggerm / PersonalUtilities
  ☆16Updated 4 years ago
• bcgsc / ntSynt-viz
  Multi-genome synteny block visualization tool
  ☆52Updated last week
• zhangrengang / Centromics
  Centromics: visualing centromeres with multiple omics data
  ☆25Updated 11 months ago
• zeeev / smartie-sv
  calling SVs from Blasr contig level alignments
  ☆54Updated 7 years ago
• Dee-chen / Tree2gd
  ☆45Updated 3 years ago
• sudmantlab / loco-pipe
  loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…
  ☆29Updated 2 weeks ago
• therkildsen-lab / lcwgs-simulation
  ☆18Updated 3 years ago
• hsigeman / findZX
  ☆22Updated 3 years ago
• annaprotasio / TE_ManAnnot
  Accompanying repository for our publications on manual curation methods for Transposable Elements.
  ☆21Updated last year