B10KGenomes / annotationLinks
Scripts used in the annotation of B10K genomes
☆15Updated 5 years ago
Alternatives and similar repositories for annotation
Users that are interested in annotation are comparing it to the libraries listed below
Sorting:
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆36Updated 5 months ago
- Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit☆11Updated 5 years ago
- Analyses of sex chromosome evolution in songbirds☆16Updated 6 years ago
- ☆12Updated 2 years ago
- ☆40Updated 2 years ago
- scripts for the project of seven thaliana genomes assembly☆40Updated 4 years ago
- Toolkit for evolutionary analyses of linkage groups☆32Updated last year
- Genome Annotation Pipeline☆36Updated 10 months ago
- Likelihood-based Selective Sweep Detection☆39Updated last year
- A genome assembly assessment pipeline.☆37Updated last year
- ☆21Updated 11 months ago
- A shiny application to visualize MCscan result☆37Updated 2 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆35Updated last year
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆31Updated 6 months ago
- A simple program for evaluate the assembly of a give genome.☆18Updated 2 years ago
- ☆30Updated 3 months ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆20Updated last year
- ☆32Updated 4 years ago
- ☆30Updated 6 months ago
- Reconstruction of ancestral genome maps☆16Updated 7 years ago
- Automated pipeline for running CoalHMM☆13Updated last year
- ☆27Updated 3 months ago
- ☆24Updated last year
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- ☆16Updated 4 years ago
- ☆24Updated 2 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆17Updated last year