Script to help assessing the evolutionary history of a TE family
☆16Sep 5, 2019Updated 6 years ago
Alternatives and similar repositories for TEorthology
Users that are interested in TEorthology are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Study of TE evolution in a population of genomes☆10Dec 11, 2023Updated 2 years ago
- Gennome annotation scripts for the crickets Gryllus bimaculatus and Laupala kohalensis.☆13Feb 28, 2022Updated 4 years ago
- ☆13Nov 15, 2017Updated 8 years ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆84May 25, 2021Updated 4 years ago
- De-novo Assembly Structural Variant Caller☆13Sep 15, 2016Updated 9 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆26Jan 26, 2026Updated 2 months ago
- ☆30Mar 4, 2022Updated 4 years ago
- ☆11Jun 17, 2023Updated 2 years ago
- ☆16Nov 25, 2019Updated 6 years ago
- MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional ba…☆12Feb 26, 2026Updated last month
- Methods and recipes for Plant Genome Annotation - Transposable Elements☆20Jun 10, 2025Updated 9 months ago
- ☆13Jan 20, 2026Updated 2 months ago
- A set of workflows written in Nextflow for Genome Annotation.☆46Jan 28, 2026Updated 2 months ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆33Mar 5, 2021Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…☆16Nov 20, 2017Updated 8 years ago
- This python script can be used to detect Whole-genome duplication (WGD) with the dS based method.☆26Feb 22, 2019Updated 7 years ago
- A long-read SV calling pipeline☆12Aug 13, 2021Updated 4 years ago
- Toolkit for evolutionary analyses of linkage groups☆34Jul 17, 2024Updated last year
- ☆41Jun 8, 2023Updated 2 years ago
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆23Jan 21, 2026Updated 2 months ago
- Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to …☆20Jan 14, 2026Updated 2 months ago
- profile the repeat landscape in a genome☆16Sep 9, 2014Updated 11 years ago
- scripts used to download and analyze insect assemblies from GenBank☆15Feb 16, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Cookiecutter for snakemake slurm profile☆15Jul 22, 2023Updated 2 years ago
- Annotate Olfactory receptor CDS from genome☆11Apr 29, 2023Updated 2 years ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆33Jun 1, 2022Updated 3 years ago
- Various scripts that I have created that are useful for genome annotation (repeats & proteins)☆16Feb 21, 2022Updated 4 years ago
- ☆15Aug 6, 2025Updated 7 months ago
- ☆31Apr 7, 2025Updated 11 months ago
- ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.☆25Dec 5, 2024Updated last year
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- A JBrowse 1 plugin to view multiple alignment format (MAF) files☆27Oct 25, 2023Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆27Feb 19, 2025Updated last year
- ☆19Jun 20, 2022Updated 3 years ago
- Useful bioinformatic scripts☆60Feb 23, 2026Updated last month
- Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit☆11Jan 17, 2020Updated 6 years ago
- scripts for the project of seven thaliana genomes assembly☆42May 22, 2021Updated 4 years ago
- Pipeline for homeobox gene identification☆11Aug 8, 2023Updated 2 years ago
- BITACORA: A Bioinformatics tool for gene family annotation☆54Dec 10, 2025Updated 3 months ago