Script to help assessing the evolutionary history of a TE family
☆16Sep 5, 2019Updated 6 years ago
Alternatives and similar repositories for TEorthology
Users that are interested in TEorthology are comparing it to the libraries listed below
Sorting:
- Gennome annotation scripts for the crickets Gryllus bimaculatus and Laupala kohalensis.☆13Feb 28, 2022Updated 4 years ago
- Study of TE evolution in a population of genomes☆10Dec 11, 2023Updated 2 years ago
- ☆13Nov 15, 2017Updated 8 years ago
- A long-read SV calling pipeline☆12Aug 13, 2021Updated 4 years ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆84May 25, 2021Updated 4 years ago
- ☆13Jan 20, 2026Updated last month
- De-novo Assembly Structural Variant Caller☆13Sep 15, 2016Updated 9 years ago
- ☆26Jan 26, 2026Updated last month
- profile the repeat landscape in a genome☆16Sep 9, 2014Updated 11 years ago
- This python script can be used to detect Whole-genome duplication (WGD) with the dS based method.☆25Feb 22, 2019Updated 7 years ago
- Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to …☆19Jan 14, 2026Updated last month
- Toolkit for evolutionary analyses of linkage groups☆33Jul 17, 2024Updated last year
- MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional ba…☆12Feb 26, 2026Updated last week
- ☆16Nov 25, 2019Updated 6 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆33Mar 5, 2021Updated 5 years ago
- my commonly used perl script☆19Aug 28, 2020Updated 5 years ago
- ☆16Oct 9, 2024Updated last year
- Annotate Olfactory receptor CDS from genome☆10Apr 29, 2023Updated 2 years ago
- ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.☆25Dec 5, 2024Updated last year
- These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…☆16Nov 20, 2017Updated 8 years ago
- Methods and recipes for Plant Genome Annotation - Transposable Elements☆20Jun 10, 2025Updated 9 months ago
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆22Jan 21, 2026Updated last month
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- CLfinder-OrthNet, a pipeline to encode orthologs from multiple genomes and their evolutionary history into networks (OrthNets) based on c…☆10Jun 9, 2022Updated 3 years ago
- ☆41Jun 8, 2023Updated 2 years ago
- ☆25Nov 29, 2022Updated 3 years ago
- A set of workflows written in Nextflow for Genome Annotation.☆46Jan 28, 2026Updated last month
- scripts for the project of seven thaliana genomes assembly☆42May 22, 2021Updated 4 years ago
- A JBrowse 1 plugin to view multiple alignment format (MAF) files☆27Oct 25, 2023Updated 2 years ago
- ☆11Sep 1, 2022Updated 3 years ago
- The complete sequence of a Chinese individual☆11Oct 8, 2024Updated last year
- Phylogenetic iDentification of Subgenomes☆10Jul 7, 2022Updated 3 years ago
- Pipeline for homeobox gene identification☆11Aug 8, 2023Updated 2 years ago
- Newick tree processing☆13Feb 22, 2026Updated 2 weeks ago
- Code for TAD_SV project☆11Mar 16, 2022Updated 3 years ago
- Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit☆11Jan 17, 2020Updated 6 years ago
- scripts used to analyse horizontal transfer and evolution of transposable elements in 307 vertebrate species☆11May 16, 2021Updated 4 years ago
- Scripts and procedures for detecting positively selected genes and codons in primates☆22Nov 14, 2020Updated 5 years ago
- ☆26Feb 24, 2026Updated last week