Invertory of TE-gene isoforms
☆14Sep 18, 2023Updated 2 years ago
Alternatives and similar repositories for ParasiTE
Users that are interested in ParasiTE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆11May 12, 2025Updated 11 months ago
- Domain based annotation of transposable elements☆23Oct 8, 2025Updated 6 months ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆36Apr 17, 2026Updated 2 weeks ago
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆13Apr 28, 2026Updated last week
- Inferring natural selection by comparative population genomic analysis across species☆27Oct 31, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 8 months ago
- An R package for comparative transcriptomic analyses of hybrids and their progenitors☆16Sep 5, 2024Updated last year
- Bash scripts and data used in pantranscriptomic paper☆24Oct 21, 2022Updated 3 years ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated last year
- FLAME: Full Length Adjecency Matrix Enumeration - is a module that allows for the analysis of ONT Nanopore RNA long-read sequencing data.…☆12May 8, 2025Updated 11 months ago
- Quantification of transposable element expression using RNA-seq☆89Feb 8, 2024Updated 2 years ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆15Apr 4, 2024Updated 2 years ago
- ☆11Jul 4, 2022Updated 3 years ago
- A package to count reads mapping on transposable elements subfamilies, families and classes.☆12Feb 3, 2023Updated 3 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Better Alignments with Translated HMMER☆25Apr 30, 2026Updated last week
- ☆15Apr 26, 2023Updated 3 years ago
- Tool for finding matches to degenerate sequence motifs in FASTA files.☆13Mar 11, 2024Updated 2 years ago
- ☆13Nov 15, 2017Updated 8 years ago
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆73Jan 31, 2024Updated 2 years ago
- SRF: Satellite Repeat Finder☆102Jan 8, 2024Updated 2 years ago
- PhyloForge: Unifying micro and macro evolution with comprehensive genomic signals☆10May 17, 2024Updated last year
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆57Jul 19, 2025Updated 9 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- COsine SImilarity-based Genotyper using pangenomes☆32Feb 13, 2026Updated 2 months ago
- ☆20Oct 5, 2022Updated 3 years ago
- A tool for discovering transposable elements and describing patterns of genome evolution☆31Apr 23, 2023Updated 3 years ago
- ☆21Dec 13, 2024Updated last year
- Long-read Isoform Quantification and Analysis☆39Mar 25, 2025Updated last year
- Infering ancestral synteny with hierarchical orthologous groups☆37Oct 17, 2025Updated 6 months ago
- Newick tree processing☆13Mar 25, 2026Updated last month
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated last year
- ☆21Apr 20, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annot…☆18Mar 21, 2026Updated last month
- TR annotation tool VAMPIRE☆18Apr 26, 2026Updated last week
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 6 months ago
- ☆11Sep 4, 2024Updated last year
- Everything but the kitchen sink☆13Feb 6, 2025Updated last year
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Sep 24, 2024Updated last year
- ☆158Apr 13, 2026Updated 3 weeks ago