JBerthelier / ParasiTE
Invertory of TE-gene isoforms
☆9Updated last year
Related projects ⓘ
Alternatives and complementary repositories for ParasiTE
- Plant genome assembly and annotation pipeline using snakemake☆35Updated last year
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆11Updated last month
- Transposable Elements MOvement detection using LOng reads☆19Updated this week
- read and analyse RepeatMasker output☆23Updated last year
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆23Updated 2 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 6 years ago
- ☆15Updated 3 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆21Updated 7 years ago
- ☆10Updated 9 years ago
- Dynamic Elongation of a Genome Assembly Path☆15Updated 6 months ago
- ☆20Updated last year
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆16Updated 5 years ago
- Integrate multiple genome assemblies into a pangenome graph☆32Updated 2 years ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆13Updated 3 weeks ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆19Updated 4 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated last week
- ☆15Updated 2 years ago
- repository for code used in analysis of open wild wheat consortium☆15Updated 2 years ago
- The tools are used for displaying hic signal of genome☆22Updated 3 years ago
- Yet another Hi-C scaffolding tool☆19Updated 2 weeks ago
- ☆16Updated 4 years ago
- ☆21Updated last year
- A Hi-C scaffolding method☆22Updated 2 years ago
- B73Ab10 genome assembly methods☆16Updated 2 years ago
- A repo contains historical and updated MTEC libraries.☆15Updated 4 years ago
- GENE-SWitCH project RNA-Seq analysis pipeline☆23Updated 5 months ago
- Computational Analysis of Gene Expression Evolution☆36Updated last week
- ☆22Updated 2 weeks ago
- ☆21Updated 2 months ago
- Scripts to do haplotype analysis on pan genomes.☆21Updated 4 years ago