gwct / grampaLinks
Gene-tree Reconciliation Algorithm with MUL-trees for Polyploid Analysis
☆17Updated 6 months ago
Alternatives and similar repositories for grampa
Users that are interested in grampa are comparing it to the libraries listed below
Sorting:
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 11 months ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 6 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆36Updated 3 years ago
- A tool to infer species tree and phylogenetic network from multilocus data☆32Updated 5 years ago
- Quantifying Introgression via Branch Lengths☆56Updated 3 years ago
- TSEBRA: Transcript Selector for BRAKER☆49Updated 2 months ago
- Portable solution to generate genome alignment chains using lastz☆60Updated last month
- ☆43Updated 2 years ago
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆21Updated last year
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆35Updated last year
- A shiny application to visualize MCscan result☆38Updated 3 years ago
- A massively parallel tool for model selection and tree inference on thousands of genes☆51Updated last year
- SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event.☆23Updated last year
- Tutorial about R package PopGenome☆43Updated 6 years ago
- Multi-genome synteny block visualization tool☆52Updated 3 weeks ago
- Toolkit for evolutionary analyses of linkage groups☆33Updated last year
- STAG: Species Tree from All Genes☆34Updated 7 years ago
- Identification of transposable element families from pangenome polymorphisms☆55Updated 7 months ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Updated 4 years ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆37Updated 2 years ago
- Genome Annotation Pipeline☆41Updated last year
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆50Updated 2 months ago
- Tutorials on phylogenomic analyses for the ForBio Phylogenomics course☆38Updated last year
- ☆35Updated 5 years ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆36Updated 3 weeks ago
- An R package to visualize chromosome scale repeat patterns and predict centromere locations.☆44Updated 2 months ago
- Tutorials on evolutionary genomics☆46Updated 3 years ago
- Detecting natural selection from population-based genetic data☆28Updated 6 years ago
- ☆45Updated 9 years ago
- Infer demographic history with the Moran model☆51Updated 7 months ago