Gene-tree Reconciliation Algorithm with MUL-trees for Polyploid Analysis
☆16Jul 25, 2025Updated 10 months ago
Alternatives and similar repositories for grampa
Users that are interested in grampa are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Newick tree processing☆13Mar 25, 2026Updated 2 months ago
- ☆27Apr 14, 2021Updated 5 years ago
- Pipeline for generate Ks plots of transcriptome data.☆12Dec 27, 2017Updated 8 years ago
- Bayesian molecular clock dating tutorial with genome-scale datasets☆19Dec 4, 2021Updated 4 years ago
- ☆19Dec 5, 2020Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆10Sep 11, 2020Updated 5 years ago
- ☆14Mar 18, 2025Updated last year
- ☆13May 13, 2024Updated 2 years ago
- A tool for divide-and-conquer tree estimation via a shared distance matrix☆10Mar 19, 2019Updated 7 years ago
- Biodiversity Genomics Academy 2023: Understanding k-mers and ploidy using Smudgeplot☆11Sep 12, 2023Updated 2 years ago
- RNA-seq data amalgamation for a large-scale evolutionary transcriptomics☆13Apr 15, 2026Updated last month
- ☆14Dec 3, 2024Updated last year
- i-ADHoRe is a highly sensitive software tool to detect degenerated homology relations within and between different genomes.☆17Jun 28, 2024Updated last year
- package for interacting with the chromosome counts database (CCDB) at https://taux.evolseq.net/CCDB_web/☆13Jul 28, 2025Updated 9 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Mar 19, 2026Updated 2 months ago
- VESPA: Very large-scale Evolutionary and Selective Pressure Analyses☆15Mar 18, 2022Updated 4 years ago
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆16Apr 29, 2025Updated last year
- Reconstruction of ancestral genome maps☆16Mar 29, 2018Updated 8 years ago
- DFOIL: Introgression Testing for Five Taxa☆33May 15, 2021Updated 5 years ago
- HyPhy standalone analyses☆54Jan 5, 2026Updated 4 months ago
- Bash scripts for analysis of Hyb-Seq data (from raw reads to species trees/networks)☆20May 3, 2026Updated 3 weeks ago
- Workflow to detect and phase hybrids in target capture data☆20Mar 9, 2023Updated 3 years ago
- An R package for predicting ploidal level from sequence data using site-based heterozygosity☆19Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Leaping through tree space: continuous phylogenetic inference for rooted and unrooted trees☆12Sep 6, 2023Updated 2 years ago
- Study of TE evolution in a population of genomes☆10Dec 11, 2023Updated 2 years ago
- Fast and accurate tool for estimating genomic distances between genome-skims☆47Sep 28, 2023Updated 2 years ago
- Implementation of the EM algorithm for the detection of shifts in a phylogeny.☆19Sep 24, 2025Updated 8 months ago
- Python package and CLI for whole-genome duplication related analyses. **This package is deprecated in favor of** https://github.com/heche…☆86Jan 6, 2026Updated 4 months ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Apr 27, 2021Updated 5 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆38Apr 12, 2026Updated last month
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆18Nov 29, 2022Updated 3 years ago
- Clustering phylogenetic trees with python☆26Aug 14, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Script to help assessing the evolutionary history of a TE family☆16Sep 5, 2019Updated 6 years ago
- Quartet Sampling method for phylogenetic branch support evaluation☆20Feb 26, 2024Updated 2 years ago
- Code for computing various support scores for internodes☆19Apr 7, 2020Updated 6 years ago
- Helper scripts for processing and visualization of phylogenetics datasets☆31Feb 19, 2024Updated 2 years ago
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Dec 7, 2021Updated 4 years ago
- Topology weighting by iterative sampling of sub-trees☆88Jan 5, 2025Updated last year
- Collection of Python scripts for parsing/analyses of RAD-seq data☆25Mar 20, 2026Updated 2 months ago