hillerlab / ForwardGenomicsLinks
Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework
☆24Updated 2 years ago
Alternatives and similar repositories for ForwardGenomics
Users that are interested in ForwardGenomics are comparing it to the libraries listed below
Sorting:
- R package for comparison of synteny conservation at the genome-wide scale.☆14Updated last year
- Multi-genome synteny block visualization tool☆43Updated 7 months ago
- ☆32Updated 4 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆27Updated 3 weeks ago
- Chromosome-level synteny plotting using orthologous regions☆29Updated 11 months ago
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆15Updated 3 years ago
- Genome alignment and synteny plots☆31Updated 2 years ago
- R package to draw syntenic plots in 3 different styles☆42Updated this week
- CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.☆21Updated last year
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- Convergent substitution detection tool based on the PCOC model☆31Updated 3 years ago
- A tool to infer species tree and phylogenetic network from multilocus data☆32Updated 5 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 6 months ago
- Automatic evaluation of HGTs☆30Updated 6 months ago
- A shiny application to visualize MCscan result☆37Updated 2 years ago
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to …☆19Updated last year
- ☆21Updated 5 years ago
- A script that parses the OrthoFinder output and keeps only the orthogroups that meet specific criteria☆18Updated 4 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 6 months ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆31Updated 7 months ago
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated 2 years ago
- scripts for sequence and feature conversion, annotation, analysis ...☆28Updated 5 months ago
- Genome-Genome circle synteny☆25Updated last year
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆17Updated 2 years ago
- Toolkit for evolutionary analyses of linkage groups☆32Updated last year
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- FASconCAT-G offers a wide range of possibilities to edit and concatenate multiple nucleotide, amino acid, and structure sequence alignmen…☆34Updated last year
- Likelihood-based Selective Sweep Detection☆40Updated last year
- STAG: Species Tree from All Genes☆34Updated 6 years ago