Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework
☆24Mar 26, 2026Updated 7 months ago
Alternatives and similar repositories for ForwardGenomics
Users that are interested in ForwardGenomics are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Convergence analysis using relative rate and correcting for phylogenetic relatedness☆12Apr 25, 2025Updated last year
- ☆25Nov 29, 2022Updated 3 years ago
- Convergent substitution detection tool based on the PCOC model☆32Dec 2, 2021Updated 4 years ago
- Process, visualize, and analyze phylogenetic trees☆13Updated this week
- PhyloAcc a software to detect the changes of conservation of a genomic region☆39May 11, 2026Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.☆26Nov 21, 2023Updated 2 years ago
- Tools for improving the sensitivity and specificity of genome alignments☆58Mar 12, 2026Updated 7 months ago
- Killifish genomics scripts☆12Feb 19, 2021Updated 5 years ago
- Analyzing combinations of codon substitution histories☆48Updated this week
- ☆29Jul 18, 2026Updated 3 months ago
- Scripts and other material for the assembly and analysis of ratite genomes.☆27Jan 18, 2023Updated 3 years ago
- RPHAST: Phylogenetic Analysis with Space/Time Models in R☆12Nov 25, 2024Updated last year
- ☆16Oct 8, 2026Updated 3 weeks ago
- ☆13Nov 15, 2017Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆11Oct 23, 2024Updated 2 years ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆35Jan 15, 2025Updated last year
- Genome alignment and synteny plots☆36Mar 24, 2026Updated 7 months ago
- issues for semina "Data Visulization"☆13Dec 23, 2025Updated 10 months ago
- A pipeline for processing data in a comparative genomics project.☆10Jan 18, 2021Updated 5 years ago
- This is used to call Codeml to calculate the positive selection of gene in Branch-Sites Model.(Require codon sequence)☆18Nov 18, 2021Updated 4 years ago
- Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method☆18Dec 29, 2022Updated 3 years ago
- Analysis of convergence between organismal traits and DNA/protein sequences☆71Sep 17, 2026Updated last month
- repository for materials to do with the VGP phase 1 data freeze, analyses, and publication☆11Dec 23, 2025Updated 10 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- R package to draw syntenic plots in 3 different styles☆47Feb 2, 2026Updated 8 months ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Apr 28, 2020Updated 6 years ago
- Divergence time estimation in the complex history of gene family evolution☆11Updated this week
- ☆15Jul 21, 2022Updated 4 years ago
- A simple script to run an alignment with nucmer and visualise its results.☆10Apr 17, 2023Updated 3 years ago
- This computational method has been published in BMC genomics as: "Identifying branch-specific positive selection throughout the regulato…☆18Sep 23, 2026Updated last month
- Genome-Genome circle synteny☆25Oct 9, 2026Updated 3 weeks ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆46Nov 21, 2019Updated 6 years ago
- A integrated pipeline for estimating Convergent accelerated evolutionary conserved non-coding elements☆21Aug 29, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Find and visualize rearrangements in DNA sequences☆56Jun 3, 2026Updated 4 months ago
- Portable solution to generate genome alignment chains using lastz☆74Updated this week
- A JBrowse 1 plugin to view multiple alignment format (MAF) files☆27Oct 25, 2023Updated 3 years ago
- SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity …☆93Jul 30, 2026Updated 3 months ago
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Dec 7, 2021Updated 4 years ago
- ggideogram is a ggplot2 extension package for drawing chromosome diagrams☆20Nov 29, 2024Updated last year
- HyPhy 2.5.x (Maintenance Mode — bug fixes only). All active development has moved to HyPhy 3: https://github.com/veg/hyphy-3☆275Oct 13, 2026Updated 2 weeks ago