hillerlab / ForwardGenomics
Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework
☆22Updated 2 years ago
Alternatives and similar repositories for ForwardGenomics:
Users that are interested in ForwardGenomics are comparing it to the libraries listed below
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆24Updated last week
- Genome alignment and synteny plots☆29Updated last year
- Multi-genome synteny block visualization tool☆32Updated 2 months ago
- Yet another Hi-C scaffolding tool☆19Updated 5 months ago
- R package for comparison of synteny conservation at the genome-wide scale.☆14Updated 9 months ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆25Updated last month
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆13Updated 4 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆16Updated 5 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆25Updated 3 years ago
- R package to draw syntenic plots in 3 different styles☆39Updated last year
- scripts to parse and analyse MCScanX collinearity output☆31Updated 5 years ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- Consensus genome annotation using OMA☆22Updated 3 months ago
- An R package to infer and analyze synteny networks from protein sequences☆29Updated 3 months ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆18Updated 5 years ago
- scripts for sequence and feature conversion, annotation, analysis ...☆27Updated 2 weeks ago
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated 2 years ago
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆14Updated 3 years ago
- Transposable Elements MOvement detection using LOng reads☆21Updated 4 months ago
- Visualising discordant reads☆15Updated 9 years ago
- A Hi-C scaffolding method☆23Updated 3 years ago
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆17Updated 2 years ago
- ☆32Updated 4 years ago
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆18Updated 2 years ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated 6 months ago
- Convergent substitution detection tool based on the PCOC model☆30Updated 3 years ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆28Updated 2 months ago
- A box of genomics tools☆21Updated 4 years ago
- ☆22Updated 7 months ago