hillerlab / ForwardGenomicsLinks
Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework
☆24Updated 3 years ago
Alternatives and similar repositories for ForwardGenomics
Users that are interested in ForwardGenomics are comparing it to the libraries listed below
Sorting:
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆30Updated 4 months ago
- Multi-genome synteny block visualization tool☆52Updated this week
- Chromosome-level synteny plotting using orthologous regions☆31Updated last year
- Genome alignment and synteny plots☆33Updated 2 years ago
- R package for comparison of synteny conservation at the genome-wide scale.☆14Updated last year
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- A tool to infer species tree and phylogenetic network from multilocus data☆32Updated 5 years ago
- Automatic evaluation of HGTs☆30Updated last year
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 6 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆27Updated 4 months ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆38Updated 2 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆18Updated 2 years ago
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- a broadly applicable tool for automated gene identification and retrieval☆32Updated last year
- ☆35Updated 5 years ago
- An R package to infer and analyze synteny networks from protein sequences☆36Updated 6 months ago
- scripts for sequence and feature conversion, annotation, analysis ...☆28Updated 10 months ago
- Computational Analysis of Gene Expression Evolution☆45Updated 5 months ago
- R package to draw syntenic plots in 3 different styles☆45Updated this week
- Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to …☆19Updated 3 weeks ago
- Yet another Hi-C scaffolding tool☆22Updated last year
- FASconCAT-G offers a wide range of possibilities to edit and concatenate multiple nucleotide, amino acid, and structure sequence alignmen…☆35Updated last year
- Convergent substitution detection tool based on the PCOC model☆31Updated 4 years ago
- A tool for recovering synteny blocks from multiple alignment☆32Updated 4 years ago
- Toolkit for evolutionary analyses of linkage groups☆33Updated last year
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆15Updated 4 years ago
- read and analyse RepeatMasker output☆27Updated 2 years ago
- Genome-Genome circle synteny☆25Updated 2 years ago
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated 2 years ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆33Updated 3 years ago