Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework
☆24Mar 26, 2026Updated 3 months ago
Alternatives and similar repositories for ForwardGenomics
Users that are interested in ForwardGenomics are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆25Nov 29, 2022Updated 3 years ago
- Convergent substitution detection tool based on the PCOC model☆31Dec 2, 2021Updated 4 years ago
- Scripts and other material for the assembly and analysis of ratite genomes.☆27Jan 18, 2023Updated 3 years ago
- Killifish genomics scripts☆12Feb 19, 2021Updated 5 years ago
- ☆28Apr 21, 2026Updated 2 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.☆23Nov 21, 2023Updated 2 years ago
- Tools for improving the sensitivity and specificity of genome alignments☆58Mar 12, 2026Updated 3 months ago
- Newick tree processing☆13Jun 22, 2026Updated last week
- RPHAST: Phylogenetic Analysis with Space/Time Models in R☆13Nov 25, 2024Updated last year
- PhyloAcc a software to detect the changes of conservation of a genomic region☆38May 11, 2026Updated last month
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆35Jan 15, 2025Updated last year
- ☆15Apr 16, 2026Updated 2 months ago
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Dec 7, 2021Updated 4 years ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆15Apr 22, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Genome alignment and synteny plots☆35Mar 24, 2026Updated 3 months ago
- A tool to infer species tree and phylogenetic network from multilocus data☆32Jul 2, 2020Updated 5 years ago
- Analysis of convergence between organismal traits and DNA/protein sequences☆68Apr 17, 2026Updated 2 months ago
- ExTraMapper is a tool to find Exon and Transcript-level Mappings of a given pair of orthologous genes between two organisms using sequenc…☆11Apr 20, 2022Updated 4 years ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Apr 28, 2020Updated 6 years ago
- Analyzing combinations of codon substitution histories☆48Updated this week
- TreeExp 2.0: Toolbox for analyzing expression evolution based on RNA-seq count data☆15Jul 12, 2019Updated 6 years ago
- R package to draw syntenic plots in 3 different styles☆46Feb 2, 2026Updated 4 months ago
- HyPhy: Hypothesis testing using Phylogenies☆265Jun 18, 2026Updated last week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A genome completeness evaluation tool based on miniprot☆248Jun 20, 2026Updated last week
- Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method☆17Dec 29, 2022Updated 3 years ago
- RNA-seq data amalgamation for a large-scale evolutionary transcriptomics☆13Jun 15, 2026Updated 2 weeks ago
- ☆24Apr 17, 2025Updated last year
- ☆22Sep 12, 2019Updated 6 years ago
- Performs MCMCglmm on multiple phylogenetic trees☆11Apr 17, 2025Updated last year
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Apr 25, 2025Updated last year
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated 2 years ago
- Find and visualize rearrangements in DNA sequences☆55Jun 3, 2026Updated 3 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- This is used to call Codeml to calculate the positive selection of gene in Branch-Sites Model.(Require codon sequence)☆18Nov 18, 2021Updated 4 years ago
- a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference☆90Jun 22, 2026Updated last week
- Strand and WGD aware syntenic gene identification☆16Oct 16, 2025Updated 8 months ago
- Tools for working with second gen assemblies, fasta sequences, etc☆95Sep 8, 2016Updated 9 years ago
- Computational Analysis of Gene Expression Evolution☆48Apr 17, 2026Updated 2 months ago
- Annotate Olfactory receptor CDS from genome☆11Apr 29, 2023Updated 3 years ago
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Jun 10, 2021Updated 5 years ago