☆17Feb 16, 2026Updated 5 months ago
Alternatives and similar repositories for matreex
Users that are interested in matreex are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Swiss-Army-Knife for Bioinformaticians☆15Jul 3, 2026Updated 2 weeks ago
- ☆14Oct 29, 2024Updated last year
- Possvm: find clusters of orthologs in phylogenies using species overlap & MCL☆19Jul 19, 2024Updated 2 years ago
- Methods for the analyses described in Álvarez-Carretero et al. 2022 (https://doi.org/10.1038/s41586-021-04341-1)☆21Dec 15, 2025Updated 7 months ago
- Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction☆11Sep 29, 2014Updated 11 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- An R package to perform systematic quality checks on comparative genomics analyses☆12Mar 5, 2026Updated 4 months ago
- PhyloFisher is a software package written in Python3 that can be used for the creation, analysis, and visualization of phylogenomic datas…☆36Apr 15, 2026Updated 3 months ago
- ☆83May 2, 2026Updated 2 months ago
- Biopsy - the Bioinformatic Optimisation System☆16Nov 1, 2015Updated 10 years ago
- A Julia package for handle genome graph in the GFA format.☆11Sep 2, 2022Updated 3 years ago
- Estimate node ages of a phylogeny by approximating the phylogenetic likelihood with a multivariate normal distribution.☆12Jun 23, 2025Updated last year
- ☆12Feb 16, 2026Updated 5 months ago
- Code for LazyAF pipeline☆23Feb 12, 2024Updated 2 years ago
- Pipeline for homeobox gene identification☆11Aug 8, 2023Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Newick tree processing☆13Updated this week
- Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n…☆25Apr 1, 2026Updated 3 months ago
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆57Jun 17, 2026Updated last month
- Homologizer: phasing gene copies into polyploid subgenomes☆13Feb 3, 2026Updated 5 months ago
- Detection of outlier genes and species in phylogenomics☆19Dec 14, 2025Updated 7 months ago
- exploring viral genome assembly with variation graph tools☆20May 18, 2020Updated 6 years ago
- a broadly applicable tool for automated gene identification and retrieval☆42Jun 16, 2026Updated last month
- Gene tree - species tree reconciliation from gene tree distributions☆43Apr 30, 2026Updated 2 months ago
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆60Apr 24, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- run-length BWT tools for genomic sequences☆19May 19, 2022Updated 4 years ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆34Jun 1, 2022Updated 4 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆41Dec 20, 2023Updated 2 years ago
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆19Mar 26, 2023Updated 3 years ago
- (Greetings_here_is_yet_another) Rate of Adaptive Protein Evolution Software☆10Jul 19, 2024Updated 2 years ago
- Complete assemblies of non-human primate genomes☆62May 20, 2025Updated last year
- Identifying misassemblies via deep learning☆11May 1, 2024Updated 2 years ago
- ☆15Jun 6, 2023Updated 3 years ago
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆208Nov 23, 2025Updated 7 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Tree reconstruction of ancestry using incomplete lineage sorting☆11Jan 9, 2026Updated 6 months ago
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- CPANG19 - Computational PANGenomics (2019)☆12May 7, 2020Updated 6 years ago
- This is a basic repository with all the scripts necessary to reconstruct the data analysis from our work on the 200 Genomes☆12Aug 31, 2018Updated 7 years ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 8 months ago
- Scaffolding of genomic assemblies with RNA seq data☆15Oct 8, 2015Updated 10 years ago
- oxford dot plots☆173Jul 2, 2026Updated 2 weeks ago