DessimozLab / matreexLinks
☆16Updated 4 months ago
Alternatives and similar repositories for matreex
Users that are interested in matreex are comparing it to the libraries listed below
Sorting:
- a broadly applicable tool for automated gene identification and retrieval☆32Updated 11 months ago
- ☆26Updated 4 years ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated 2 months ago
- Taxon-aware analysis of clustered protein sequences☆31Updated last year
- WGS (Wheat) Robust Assembly Pipeline☆22Updated 4 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- A program for divvying or partially filtering multiple sequence alignments☆27Updated 6 years ago
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆53Updated 11 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆35Updated 5 months ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆32Updated 3 years ago
- Within-species genome-wide dN/dS estimation from very many genomes☆21Updated 5 years ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Updated 10 months ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated 2 months ago
- Improved Phased Assembler☆28Updated 3 years ago
- An R package to infer and analyze synteny networks from protein sequences☆34Updated 4 months ago
- ☆42Updated last year
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 7 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Infering ancestral synteny with hierarchical orthologous groups☆35Updated last month
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- a python package for automated generation of phylogenetic trees from genbank files☆23Updated last week
- ☆20Updated 3 years ago
- SHOOT.bio - the phylogenetic search engine☆27Updated 2 years ago
- ☆27Updated 5 years ago
- ☆26Updated 7 years ago
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆14Updated 3 years ago
- tree visualization for tree + annotation data☆43Updated 5 months ago
- Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework☆24Updated 2 years ago
- Haplotype-aware genome assembly toolkit☆30Updated 5 years ago
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated 2 years ago