Alternatives and similar repositories for matreex

Users that are interested in matreex are comparing it to the libraries listed below

• JLSteenwyk / orthofisher
  a broadly applicable tool for automated gene identification and retrieval
  ☆31Updated 5 months ago
• Rowena-h / BUSCOfilter
  A tool to filter BUSCO output into single-copy gene files for phylogenomics
  ☆13Updated 9 months ago
• JLSteenwyk / orthohmm
  Improved Inference of Ortholog Groups using Hidden Markov Models
  ☆34Updated 2 months ago
• gengit / PosiGene
  ☆26Updated 4 years ago
• simonwhelan / prequal
  PREQUAL: a pre-alignment quality filter for comparative sequence analyses
  ☆31Updated 2 years ago
• balabanmetin / uDance
  ☆43Updated last year
• bioinfologics / w2rap
  WGS (Wheat) Robust Assembly Pipeline
  ☆22Updated 3 years ago
• at-cg / mm2-plus
  Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)
  ☆31Updated last week
• rnajena / poseidon
  PoSeiDon: positive selection detection and recombination analysis pipeline
  ☆38Updated 2 months ago
• ThomasDOtto / ILRA
  Improvement of Long Read Assemblies (ILRA) is a pipeline to help in the post assembly process (finishing) by cleaning and merging contigs…
  ☆13Updated 6 months ago
• EvolBioInf / fur
  Find Unique genomic Regions
  ☆29Updated last month
• almeidasilvaf / syntenet
  An R package to infer and analyze synteny networks from protein sequences
  ☆30Updated 4 months ago
• DRL / kinfin
  Taxon-aware analysis of clustered protein sequences
  ☆31Updated 10 months ago
• davidemms / SHOOT
  SHOOT.bio - the phylogenetic search engine
  ☆24Updated last year
• stajichlab / OrthoMCL
  ☆25Updated 9 years ago
• Rinoahu / SwiftOrtho
  A high performance tool to identify orthologs and paralogs across genomes.
  ☆26Updated 2 years ago
• karubiotools / getSequenceInfo
  Perl and Python scripts allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories
  ☆14Updated last month
• cpockrandt / PhyloCSFpp
  PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…
  ☆31Updated 3 years ago
• JLSteenwyk / orthosnap
  a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
  ☆26Updated 3 months ago
• linsalrob / genbank_to
  Convert genbank files to a swath of other formats
  ☆18Updated last year
• evolbioinfo / booster
  ☆28Updated 4 years ago
• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆19Updated 6 months ago
• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆28Updated 3 years ago
• microbial-pangenomes-lab / microGWAS
  Bacterial GWAS analysis
  ☆40Updated 3 weeks ago
• dvdylus / read2tree
  ☆20Updated 3 years ago
• b-brankovics / grabb
  GRAbB (Genome Region Assembly by Baiting) is a program designed to assemble selected regions of the genome or transcriptome using referen…
  ☆13Updated 4 years ago
• harta55 / EnTAP
  EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP
  ☆40Updated 3 months ago
• HuffordLab / GenomeQC
  ☆32Updated 4 years ago
• DessimozLab / edgehog
  Infering ancestral synteny with hierarchical orthologous groups
  ☆14Updated 3 weeks ago
• Sanrrone / GGisy
  Genome-Genome circle synteny
  ☆25Updated last year