DessimozLab / matreex

Related projects ⓘ

Alternatives and complementary repositories for matreex

• JLSteenwyk / orthofisher
  a broadly applicable tool for automated gene identification and retrieval
  ☆28Updated 4 months ago
• simonwhelan / prequal
  PREQUAL: a pre-alignment quality filter for comparative sequence analyses
  ☆30Updated 2 years ago
• gengit / PosiGene
  ☆26Updated 3 years ago
• bioinfologics / w2rap
  WGS (Wheat) Robust Assembly Pipeline
  ☆22Updated 3 years ago
• balabanmetin / uDance
  ☆43Updated 7 months ago
• biovcnet / topic-functional-annotation
  A repository for the lessons and notebooks used for Binder tutorials
  ☆13Updated 4 years ago
• davidemms / STAG
  STAG: Species Tree from All Genes
  ☆31Updated 5 years ago
• simonwhelan / Divvier
  A program for divvying or partially filtering multiple sequence alignments
  ☆22Updated 5 years ago
• bpucker / KIPEs
  Knowledge-based Identification of Pathway Enzymes (KIPEs) performs an automatic annotation of the flavonoid biosynthesis steps in a new t…
  ☆13Updated 4 months ago
• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆28Updated 2 years ago
• Gaius-Augustus / Tiberius
  deep learning gene finder
  ☆32Updated this week
• Rinoahu / SwiftOrtho
  A high performance tool to identify orthologs and paralogs across genomes.
  ☆27Updated last year
• davidemms / SHOOT
  SHOOT.bio - the phylogenetic search engine
  ☆24Updated last year
• uio-cels / NucDiff
  In-depth characterization and annotation of differences between two sets of DNA sequences
  ☆59Updated 4 years ago
• rnajena / poseidon
  PoSeiDon: positive selection detection and recombination analysis pipeline
  ☆35Updated last week
• reubwn / collinearity
  scripts to parse and analyse MCScanX collinearity output
  ☆29Updated 4 years ago
• almeidasilvaf / syntenet
  An R package to infer and analyze synteny networks from protein sequences
  ☆21Updated last month
• dvdylus / read2tree
  ☆20Updated 2 years ago
• harta55 / EnTAP
  EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP
  ☆37Updated last week
• Arkadiy-Garber / SprayNPray
  Rapid and simple taxonomic profiling of genome and metagenome contigs
  ☆27Updated last year
• lpryszcz / pyScaf
  Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.
  ☆24Updated 5 years ago
• cpockrandt / PhyloCSFpp
  PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…
  ☆30Updated 2 years ago
• karubiotools / getSequenceInfo
  A Perl script allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories
  ☆12Updated 6 months ago
• TimothyStephens / Dinoflagellate_Annotation_Workflow
  Dinoflagellate Annotation Workflow
  ☆12Updated 2 years ago
• raymondkiu / bioinformatics-tools
  Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files
  ☆19Updated last year
• danny-wilson / genomegaMap
  Within-species genome-wide dN/dS estimation from very many genomes
  ☆19Updated 4 years ago
• HaploConduct / HaploConduct
  Haplotype-aware genome assembly toolkit
  ☆29Updated 4 years ago
• compbiol / CAMSA
  CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies
  ☆24Updated 4 years ago
• pangenome / impg
  implicit pangenome graph
  ☆42Updated this week
• fmenardo / Treemmer
  Python tool to reduce size and redundancy of phylogenetic datasets
  ☆27Updated last year