Alternatives and similar repositories for bio_tools:

Users that are interested in bio_tools are comparing it to the libraries listed below

• phasegenomics / juicebox_scripts
  A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats
  ☆65Updated 3 years ago
• tsackton / ratite-genomics
  Scripts and other material for the assembly and analysis of ratite genomes.
  ☆26Updated 2 years ago
• JiangYuLab / CNVcaller
  ☆42Updated last year
• JiaoLab2021 / EVG
  A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads
  ☆37Updated 7 months ago
• wjian8 / psvcp_v1.01
  Pan-genome Construction and Population Structure Variation Calling pipeline
  ☆36Updated 4 months ago
• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆38Updated 3 years ago
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆52Updated last year
• steuernb / NLR-Annotator
  NLR-Annotator upload
  ☆62Updated last year
• 4ureliek / Parsing-RepeatMasker-Outputs
  Few scripts facilitating the extraction of info from Repeat Masker .out files
  ☆78Updated 3 years ago
• phyloacc / PhyloAcc
  PhyloAcc a software to detect the changes of conservation of a genomic region
  ☆29Updated 3 months ago
• mahulchak / svmu
  A program to call variants from genome alignment
  ☆77Updated 10 months ago
• Jwindler / AutoHiC
  A novel genome assembly pipeline based on deep learning
  ☆59Updated last month
• Sunhh / NGS_data_processing
  Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.
  ☆51Updated this week
• mapleforest / HaploMerger2
  ☆43Updated 8 years ago
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆34Updated 2 years ago
• qiao-xin / Scripts_for_GB
  The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".
  ☆28Updated 3 years ago
• hillerlab / GeneLossPipe
  ☆24Updated 2 years ago
• YangJianshun / LINKVIEW2
  DNA序列比对结果 可视化展示工具
  ☆44Updated 2 years ago
• BGI-shenzhen / RectChr
  Multi-level visualization of genomic statistical variables on rectangular chromosomes
  ☆85Updated 2 months ago
• 0xTCG / biser
  A fast tool for detecting and decomposing segmental duplications in genome assemblies
  ☆46Updated 11 months ago
• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆32Updated 2 years ago
• molevol-ub / bitacora
  BITACORA: A Bioinformatics tool for gene family annotation
  ☆44Updated 9 months ago
• xzhub / LTR_Finder
  LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.
  ☆43Updated last year
• sjteresi / TE_Density
  Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…
  ☆30Updated 4 months ago
• ArimaGenomics / mapping_pipeline
  Mapping pipeline for data generated using Arima-HiC
  ☆71Updated 8 months ago
• aubombarely / Organelle_PBA
  A software to assemble chloroplast and mitochodrial genomes using PacBio data
  ☆37Updated 4 years ago
• baozg / phased-assembly-check
  ☆29Updated 3 weeks ago
• popgenome / lettuce2020
  Codes for the lettuce resequencing project in 2020
  ☆28Updated 3 years ago
• CAFS-bioinformatics / LR_Gapcloser
  use long sequenced reads to close gaps in assemblies
  ☆36Updated 6 years ago
• yongzhiyang2012 / genome_analysis
  ☆15Updated 5 years ago