wk8910 / bio_tools
Useful bioinformatic scripts
☆56Updated 5 months ago
Alternatives and similar repositories for bio_tools:
Users that are interested in bio_tools are comparing it to the libraries listed below
- Pan-genome Construction and Population Structure Variation Calling pipeline☆38Updated 7 months ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆80Updated 3 years ago
- Scripts and other material for the assembly and analysis of ratite genomes.☆26Updated 2 years ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆66Updated 3 years ago
- NLR-Annotator upload☆65Updated last year
- ☆43Updated last year
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆50Updated 5 years ago
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆53Updated last week
- This is an archive version of old RepBase library (v20170127) for RepeatMasker.☆33Updated 3 years ago
- Genome annotation pipeline☆58Updated 10 months ago
- ☆43Updated 8 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆55Updated 2 years ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆89Updated 5 months ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- Here, we sequence and de novo assemble chromosome-scale genomes of nine wild species and two cultivated accessions of tomato and construc…☆52Updated 10 months ago
- ☆71Updated last month
- ☆24Updated 2 years ago
- ☆15Updated 5 years ago
- DNA序列比对结果 可视化展示工具☆48Updated 2 years ago
- Tutorial about R package PopGenome☆41Updated 6 years ago
- use long sequenced reads to close gaps in assemblies☆37Updated 6 years ago
- AlleleFinder is a tool for identifying allele genes from polyploid genome.☆27Updated 3 months ago
- Mapping pipeline for data generated using Arima-HiC☆76Updated 11 months ago
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- A novel genome assembly pipeline based on deep learning☆62Updated 4 months ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 4 years ago
- A shiny application to visualize MCscan result☆36Updated 2 years ago
- A program to call variants from genome alignment☆80Updated last year
- Tools for improving the sensitivity and specificity of genome alignments☆57Updated last year
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆48Updated last year