wk8910 / bio_tools
Useful bioinformatic scripts
☆53Updated 9 months ago
Related projects ⓘ
Alternatives and complementary repositories for bio_tools
- Scripts and other material for the assembly and analysis of ratite genomes.☆25Updated last year
- ☆41Updated 10 months ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆63Updated 3 years ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆29Updated last month
- A shiny application to visualize MCscan result☆33Updated 2 years ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆78Updated 3 years ago
- paml documentation and tutorials☆47Updated last year
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆51Updated 3 weeks ago
- NLR-Annotator upload☆60Updated last year
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- ☆24Updated last year
- ☆43Updated 7 years ago
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆36Updated 4 months ago
- A software to assemble chloroplast and mitochodrial genomes using PacBio data☆37Updated 4 years ago
- A program to call variants from genome alignment☆76Updated 8 months ago
- ☆24Updated 7 years ago
- LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.☆40Updated 10 months ago
- A novel genome assembly pipeline based on deep learning☆53Updated last month
- Genome annotation pipeline☆53Updated 4 months ago
- De novo annotation of young retrotransposons☆46Updated 2 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆33Updated 2 years ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated last week
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆43Updated 9 months ago
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆47Updated 4 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆51Updated last year
- Tools for working with second gen assemblies, fasta sequences, etc☆92Updated 8 years ago
- ☆13Updated 4 years ago
- Here, we sequence and de novo assemble chromosome-scale genomes of nine wild species and two cultivated accessions of tomato and construc…☆47Updated 5 months ago
- Scripts of population genomics analysis☆34Updated 6 years ago
- A pipeline to de novo assemble the stLFR reads using Supernova Assembler☆20Updated last year