Phylogenetic analysis of multi-species genome sequence alignments to identify conserved protein-coding regions
☆73Oct 16, 2023Updated 2 years ago
Alternatives and similar repositories for PhyloCSF
Users that are interested in PhyloCSF are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Annotate Olfactory receptor CDS from genome☆11Apr 29, 2023Updated 3 years ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆110Jun 17, 2022Updated 4 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Jan 26, 2022Updated 4 years ago
- Newick tree processing☆13Updated this week
- Find and visualize rearrangements in DNA sequences☆55Jun 3, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆56Jul 15, 2026Updated last week
- Tools for improving the sensitivity and specificity of genome alignments☆58Mar 12, 2026Updated 4 months ago
- The complete sequence of a Chinese individual☆14Oct 8, 2024Updated last year
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆37Mar 27, 2019Updated 7 years ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆38May 11, 2026Updated 2 months ago
- Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit☆11Jan 17, 2020Updated 6 years ago
- Generate alternative long reads with the help of target`s assemblies, target`s PacBio HiFi reads and reference genome.☆20Mar 25, 2026Updated 3 months ago
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆24Jul 1, 2026Updated 3 weeks ago
- A JBrowse 1 plugin to view multiple alignment format (MAF) files☆27Oct 25, 2023Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- PHAST☆87Jul 9, 2026Updated 2 weeks ago
- Analysis of Ebola virus genomes☆17May 18, 2015Updated 11 years ago
- ☆79Jun 2, 2023Updated 3 years ago
- Analysis of convergence between organismal traits and DNA/protein sequences☆70Apr 17, 2026Updated 3 months ago
- The MafFilter genome alignment processor☆19Apr 10, 2026Updated 3 months ago
- Genomics 3D Visualizer☆14Jun 14, 2024Updated 2 years ago
- Portable solution to generate genome alignment chains using lastz☆68Jul 15, 2026Updated last week
- VESPA: Very large-scale Evolutionary and Selective Pressure Analyses☆15Mar 18, 2022Updated 4 years ago
- FEELnc : FlExible Extraction of LncRNA☆95Jul 23, 2025Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- R package to draw syntenic plots in 3 different styles☆46Feb 2, 2026Updated 5 months ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆16Apr 22, 2024Updated 2 years ago
- De novo genome assembler.☆12Jul 30, 2018Updated 7 years ago
- Wrapper script to concatenate, align, and construct phylogenetic trees of BUSCOs☆20Sep 18, 2019Updated 6 years ago
- Infer the age of ancestral nodes in a tree sequence.☆27Jun 30, 2026Updated 3 weeks ago
- Custom scripts for monotreme genome project☆19Jan 12, 2021Updated 5 years ago
- BITACORA: A Bioinformatics tool for gene family annotation☆55Dec 10, 2025Updated 7 months ago
- Long-reads Gap-free Chromosome-scale Assembler☆79Mar 21, 2023Updated 3 years ago
- ☆13Nov 15, 2017Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆11Jul 8, 2025Updated last year
- Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework☆24Mar 26, 2026Updated 3 months ago
- ☆26Jan 26, 2026Updated 5 months ago
- CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.☆24Nov 21, 2023Updated 2 years ago
- ☆30Aug 1, 2023Updated 2 years ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆46Nov 21, 2019Updated 6 years ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆35Jul 2, 2026Updated 3 weeks ago