mlin / PhyloCSFLinks
Phylogenetic analysis of multi-species genome sequence alignments to identify conserved protein-coding regions
☆71Updated 2 years ago
Alternatives and similar repositories for PhyloCSF
Users that are interested in PhyloCSF are comparing it to the libraries listed below
Sorting:
- for visual evaluation of read support for structural variation☆56Updated last year
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆36Updated 2 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆42Updated 5 months ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆50Updated 5 years ago
- Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing☆41Updated 7 years ago
- Evolutionary Transcriptomics with R☆47Updated this week
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 10 years ago
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated last year
- A software for calculating telomere length☆73Updated 7 years ago
- Gene Fusion Visualiser☆51Updated 3 years ago
- A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes☆51Updated last year
- new repo☆28Updated 4 years ago
- visual analysis of your VCF files☆39Updated 3 years ago
- tspex: tissue-specificity calculator☆36Updated 2 years ago
- R package for inferring copy number from read depth☆32Updated 3 years ago
- Long-read splice alignment with high accuracy☆64Updated last year
- ☆46Updated 8 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 3 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆58Updated last year
- parallelized blat with multi-threads support☆55Updated last year
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated last week
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆34Updated 6 months ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆59Updated 8 years ago
- RiboDiff: Tool to detect changes in translational efficiency based on ribosome footprinting data☆24Updated 9 years ago
- Tools for processing and analyzing structural variants.☆34Updated 10 years ago
- Structural variant merging tool☆57Updated last year
- A tutorial on structural variant calling for short read sequencing data☆39Updated last year
- Flash2 has some improvements from flash_1 including new logic from innie and outie overlaps as well as some initial steps for flash for a…☆51Updated 8 years ago
- Specifications for PacBio® native file formats☆31Updated last year