mlin / PhyloCSFLinks
Phylogenetic analysis of multi-species genome sequence alignments to identify conserved protein-coding regions
☆65Updated last year
Alternatives and similar repositories for PhyloCSF
Users that are interested in PhyloCSF are comparing it to the libraries listed below
Sorting:
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 4 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated last year
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆35Updated 2 years ago
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated last year
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- A tutorial on structural variant calling for short read sequencing data☆38Updated 7 months ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆56Updated 7 years ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆33Updated 6 years ago
- tspex: tissue-specificity calculator☆30Updated last year
- Useful tools for working with Salmon output☆38Updated 4 years ago
- Digenome-toolkit ver2.☆16Updated 3 years ago
- Merging paired-end reads and removing adapters☆44Updated 2 months ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- ☆32Updated last year
- Version II of Mandalorion☆32Updated 6 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- Tip and tricks for VCF files☆21Updated 6 years ago
- Modify existing reference fasta and gff3/gtf files to include a new sequence☆31Updated this week
- ☆28Updated 2 years ago
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- Pipeline for universal design of target-enrichment probes from various sources of genomic data.☆26Updated 4 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated last year
- Personal diploid genome creation and coordinate conversion☆27Updated 2 months ago
- for visual evaluation of read support for structural variation☆54Updated last year
- toolkit to process gtf files☆17Updated 3 years ago
- De novo adapter prediction algorithm for small RNA sequencing data☆23Updated 8 years ago
- microRNA PREdiction From small RNA-seq data☆29Updated 7 years ago
- Structural variant caller☆54Updated 3 years ago
- Official repo for the standalone package of Coding Potential Calculator (CPC) 2.☆24Updated 3 years ago