mlin / PhyloCSFLinks
Phylogenetic analysis of multi-species genome sequence alignments to identify conserved protein-coding regions
☆69Updated 2 years ago
Alternatives and similar repositories for PhyloCSF
Users that are interested in PhyloCSF are comparing it to the libraries listed below
Sorting:
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- Evolutionary Transcriptomics with R☆46Updated 2 weeks ago
- for visual evaluation of read support for structural variation☆55Updated last year
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated last month
- Structural variant merging tool☆55Updated last year
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆58Updated 8 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- ☆51Updated 6 years ago
- visual analysis of your VCF files☆38Updated 2 years ago
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated last year
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 10 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆42Updated 2 months ago
- Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing☆41Updated 6 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆36Updated 2 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- This is an unsupported fork of the PacBio blasr aligner. It contains my (very beta) optimizations and new functionality. It may disappea…☆22Updated 6 years ago
- BiSulfite Bolt - A Bisulfite Sequencing Alignment and Processing Tool☆23Updated 2 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated last year
- Structural variant caller☆55Updated 3 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 4 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- ☆36Updated last year
- Materials for Spring 2021 Applied Genomics Course☆53Updated 4 years ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆76Updated last year
- Adapters for trimming☆30Updated 6 years ago
- A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes☆51Updated 9 months ago
- tspex: tissue-specificity calculator☆34Updated 2 years ago
- gatk4 RNA variant calling pipeline☆54Updated last week
- PHAST☆75Updated last week