mwpennell / geiger-v2View external linksLinks
A suite of methods and models for studying evolutionary radiations
☆24Feb 22, 2023Updated 2 years ago
Alternatives and similar repositories for geiger-v2
Users that are interested in geiger-v2 are comparing it to the libraries listed below
Sorting:
- A program for multimodel inference on speciation and trait evolution☆35Sep 4, 2017Updated 8 years ago
- phylogenetic comparative method☆11Jan 9, 2026Updated last month
- ☆36Nov 3, 2024Updated last year
- An R package for generating additional bioclimatic variables☆14Dec 5, 2024Updated last year
- ☆17Oct 21, 2024Updated last year
- Reconstruction of ancestral genome maps☆16Mar 29, 2018Updated 7 years ago
- run-length BWT tools for genomic sequences☆19May 19, 2022Updated 3 years ago
- Python version of PHLAWD☆21Oct 28, 2024Updated last year
- A tool to extract and annotate genes from raw RNA-seq reads.☆10Dec 20, 2024Updated last year
- A tool to root phylogenies☆23Sep 5, 2024Updated last year
- Package for species delimitation analysis☆11Jan 7, 2025Updated last year
- PhyloForge: Unifying micro and macro evolution with comprehensive genomic signals☆10May 17, 2024Updated last year
- SYNPHONI is a tool designed for reconstructing the dynamic evolution of syntenic relationships across all scales of phylogenetic distance…☆12May 7, 2023Updated 2 years ago
- Reconstruct Ancestral State in Phylogenies☆27May 21, 2024Updated last year
- ☆26Jan 26, 2026Updated 2 weeks ago
- SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event.☆23Sep 23, 2024Updated last year
- Newick tree processing☆13Updated this week
- ☆10Aug 21, 2025Updated 5 months ago
- Homologizer: phasing gene copies into polyploid subgenomes☆11Feb 3, 2026Updated last week
- Tree reconstruction of ancestry using incomplete lineage sorting☆11Jan 9, 2026Updated last month
- An R package to perform systematic quality checks on comparative genomics analyses☆12Jan 12, 2024Updated 2 years ago
- Estimating gene family turnover rates by likelihood-based methods☆12Aug 17, 2020Updated 5 years ago
- Scalable relaxed clock phylogenetic dating☆28Sep 3, 2025Updated 5 months ago
- Fast, accurate species tree estimation.☆12Aug 29, 2024Updated last year
- TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.☆13Mar 5, 2021Updated 4 years ago
- ☆13Jun 6, 2023Updated 2 years ago
- ☆77Jun 2, 2025Updated 8 months ago
- Robust identification of orthologous Synteny with the Orthology Index☆38Feb 1, 2026Updated last week
- ExTraMapper is a tool to find Exon and Transcript-level Mappings of a given pair of orthologous genes between two organisms using sequenc…☆11Apr 20, 2022Updated 3 years ago
- Quartet-based species tree and tree of blob estimation☆14Updated this week
- SSRMMD: A Rapid and Accurate Algorithm for Mining SSR Feature Loci and Candidate Polymorphic SSRs Based on Assembled Sequences.☆16Sep 2, 2020Updated 5 years ago
- A reliable gap filling pipeline for draft genomes☆11Sep 17, 2019Updated 6 years ago
- ☆12Jun 12, 2023Updated 2 years ago
- a broadly applicable tool for automated gene identification and retrieval☆32Dec 6, 2024Updated last year
- Machuruku☆32Jan 20, 2025Updated last year
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆33Mar 5, 2021Updated 4 years ago
- Visualizing gene tree conflict using Phyparts, and ETE3☆14Jun 17, 2023Updated 2 years ago
- ☆15Apr 22, 2024Updated last year
- Phylogenetics for the Environmental Sciences☆15Jun 18, 2019Updated 6 years ago