nclark-lab / RERconvergeLinks
Analysis of convergence between organismal traits and DNA/protein sequences
☆57Updated 3 weeks ago
Alternatives and similar repositories for RERconverge
Users that are interested in RERconverge are comparing it to the libraries listed below
Sorting:
- TSEBRA: Transcript Selector for BRAKER☆47Updated 9 months ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆58Updated 2 years ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆81Updated 4 years ago
- NLR-Annotator upload☆71Updated 2 years ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆32Updated 4 months ago
- Synteny Imager☆64Updated last month
- PacBio BAM toolkit☆46Updated 6 months ago
- TEtrimmer: a novel tool to automate manual curation of transposable elements☆76Updated 2 weeks ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆67Updated 4 years ago
- ☆78Updated last month
- Best practices and workflow for genome annotation☆77Updated 4 months ago
- ☆44Updated 8 years ago
- This is the standalone version of the EviAnn pipeline☆115Updated last week
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins☆76Updated 10 months ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆108Updated last month
- A shiny application to visualize MCscan result☆37Updated 2 years ago
- Python package and CLI for whole-genome duplication related analyses. **This package is deprecated in favor of** https://github.com/heche…☆85Updated last year
- Molecular convergence detection☆39Updated 2 months ago
- TransposonUltimate - a holistic set of tools for transposon identification☆84Updated 3 years ago
- Mapping pipeline for data generated using Arima-HiC☆80Updated last year
- Neural network classification of TE☆94Updated 2 months ago
- A list of software for pangenomics☆125Updated 2 weeks ago
- Simple pileup-based variant caller☆92Updated 4 months ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆109Updated last year
- paml documentation and tutorials☆61Updated 3 months ago
- Algorithm For Gene Order Reconstruction in Ancestors☆77Updated 2 weeks ago
- ☆137Updated 3 months ago
- Application of pan-genome for population☆108Updated 10 months ago
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆43Updated last month