Alternatives and similar repositories for ratite-genomics

Users that are interested in ratite-genomics are comparing it to the libraries listed below

• robinvanderlee / positive-selection
  Scripts and procedures for detecting positively selected genes and codons in primates
  ☆21Updated 4 years ago
• hillerlab / GeneLossPipe
  ☆24Updated 2 years ago
• xiekunwhy / bsa
  Bulked-Segregant Analysis using vcf file with or without parents
  ☆29Updated 8 months ago
• wk8910 / bio_tools
  Useful bioinformatic scripts
  ☆58Updated 9 months ago
• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆41Updated 4 years ago
• JiangYuLab / CNVcaller
  ☆42Updated last year
• phyloacc / PhyloAcc
  PhyloAcc a software to detect the changes of conservation of a genomic region
  ☆32Updated 4 months ago
• Wendellab / CisTransRegulation
  Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum
  ☆16Updated last year
• Sunhh / NGS_data_processing
  Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.
  ☆55Updated last week
• wjian8 / psvcp_v1.01
  Pan-genome Construction and Population Structure Variation Calling pipeline
  ☆42Updated 11 months ago
• Immortal2333 / Haplotype_Genome_Assembly
  Genome haplotype assembly and assessment method
  ☆12Updated last year
• meiyang12 / Genome-annotation-pipeline
  Genome annotation pipeline
  ☆60Updated last year
• HongboDoll / TomatoSuperPanGenome
  Here, we sequence and de novo assemble chromosome-scale genomes of nine wild species and two cultivated accessions of tomato and construc…
  ☆58Updated last year
• qiao-xin / Scripts_for_GB
  The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".
  ☆28Updated 4 years ago
• sc-zhang / AlleleFinder
  AlleleFinder is a tool for identifying allele genes from polyploid genome.
  ☆31Updated 7 months ago
• baozg / Potato_C88
  Chromosome-scale and haplotype-resolved assmebly of tetraploid cultiavetd potato with polyploidy graph binning
  ☆29Updated last year
• baozg / assembly-annotation-pipeline
  Plant genome assembly and annotation pipeline using snakemake
  ☆46Updated 3 months ago
• yjx1217 / Varathon
  A scalable variant calling and benchmarking framework supporting both short and long reads.
  ☆14Updated 9 months ago
• yangqimeng99 / svlearn
  A machine learning-based genotyping tool for structural variation in short reads
  ☆22Updated 4 months ago
• lurebgi / chicken-T2T
  Scripts that used in our chicken T2T manuscript.
  ☆20Updated 2 years ago
• chenym1 / genetribe
  A tool for performing collinearity-incorporating homology inference
  ☆32Updated last year
• Jwindler / Assembly_tools
  A collection of tools for Genome Assembly analysis
  ☆20Updated last year
• yongzhiyang2012 / genome_analysis
  ☆15Updated 5 years ago
• popgenome / lettuce2020
  Codes for the lettuce resequencing project in 2020
  ☆31Updated 4 years ago
• molevol-ub / bitacora
  BITACORA: A Bioinformatics tool for gene family annotation
  ☆47Updated 2 months ago
• dongwei1220 / EasySpeciesTree
  Easily construct the ML species tree with single-copy gene shared by different species.
  ☆27Updated 6 years ago
• dongling-hub / Wild-rice-Pangenome-Project
  This repository contains all codes and scripts used in the Wild Rice Pangenome Project. The project aims to provide a comprehensive analy…
  ☆18Updated 4 months ago
• steuernb / NLR-Annotator
  NLR-Annotator upload
  ☆71Updated 2 years ago
• unavailable-2374 / Genome-Wide-Annotation-Pipeline
  This is a workflow that combines multiple software, mainly for whole genome annotation of eukaryotes.
  ☆25Updated last year
• phasegenomics / juicebox_scripts
  A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats
  ☆67Updated 4 years ago