kfuku52 / amalgkitLinks
RNA-seq data amalgamation for a large-scale evolutionary transcriptomics
☆12Updated 3 months ago
Alternatives and similar repositories for amalgkit
Users that are interested in amalgkit are comparing it to the libraries listed below
Sorting:
- Molecular convergence detection☆39Updated 2 months ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Updated 7 months ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆32Updated 3 years ago
- a broadly applicable tool for automated gene identification and retrieval☆32Updated 9 months ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- orthology assignment using phylogenetic and network analyses☆45Updated 6 months ago
- Convergent substitution detection tool based on the PCOC model☆31Updated 3 years ago
- ☆26Updated 6 months ago
- a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies☆74Updated 3 weeks ago
- HyPhy standalone analyses☆46Updated 2 weeks ago
- CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.☆21Updated last year
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework☆24Updated 2 years ago
- k-mer learning materials☆74Updated 6 months ago
- A robust Python tool for the annotation of 3’ UTRs☆20Updated 6 months ago
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆52Updated 9 months ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data☆36Updated last year
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆42Updated 4 months ago
- ☆20Updated 3 years ago
- Possvm: find clusters of orthologs in phylogenies using species overlap & MCL☆14Updated last year
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated 2 years ago
- Visualize whole genome alignments as linear maps☆73Updated 3 weeks ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- Multi-genome synteny block visualization tool☆44Updated 7 months ago
- Analysis of convergence between organismal traits and DNA/protein sequences☆57Updated last month
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆39Updated 5 months ago
- ☆27Updated 5 years ago
- Computational Analysis of Gene Expression Evolution☆43Updated 2 weeks ago