kfuku52 / amalgkit
RNA-seq data amalgamation for a large-scale evolutionary transcriptomics
☆10Updated last week
Alternatives and similar repositories for amalgkit
Users that are interested in amalgkit are comparing it to the libraries listed below
Sorting:
- Molecular convergence detection☆38Updated last week
- a broadly applicable tool for automated gene identification and retrieval☆31Updated 5 months ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆40Updated 3 months ago
- ☆25Updated 2 months ago
- Multi-genome synteny block visualization tool☆37Updated 3 months ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆31Updated 2 years ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- FastK based version of Merqury☆25Updated last month
- ☆20Updated 3 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆33Updated 3 months ago
- Convergent substitution detection tool based on the PCOC model☆30Updated 3 years ago
- Tool for fully-automated inference of species trees from raw genome assemblies☆32Updated last week
- SYNPHONI is a tool designed for reconstructing the dynamic evolution of syntenic relationships across all scales of phylogenetic distance…☆11Updated 2 years ago
- Computational Analysis of Gene Expression Evolution☆40Updated last month
- Improved Phased Assembler☆28Updated 3 years ago
- read and analyse RepeatMasker output☆24Updated last year
- CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.☆19Updated last year
- Red: an intelligent, rapid, accurate tool for detecting repeats de-novo on the genomic scale.☆17Updated last year
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆32Updated last month
- Shark genomics & beyond - This is a central portal page for the project Squalomix, directed mainly by Molecular Life History Laboratory a…☆10Updated 2 months ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- ☆16Updated last month
- Yet another Hi-C scaffolding tool☆19Updated 6 months ago
- Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework☆22Updated 2 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 3 months ago
- Domain based annotation of transposable elements☆19Updated this week
- ☆31Updated 10 months ago
- ☆27Updated last year
- An R package to infer and analyze synteny networks from protein sequences☆30Updated 5 months ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆26Updated last month