kfuku52 / csubst
Molecular convergence detection
☆32Updated last week
Alternatives and similar repositories for csubst:
Users that are interested in csubst are comparing it to the libraries listed below
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆29Updated last month
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- Analysis of convergence between organismal traits and DNA/protein sequences☆49Updated 6 months ago
- A shiny application to visualize MCscan result☆34Updated 2 years ago
- Convergent substitution detection tool based on the PCOC model☆30Updated 3 years ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- BITACORA: A Bioinformatics tool for gene family annotation☆44Updated 9 months ago
- STAG: Species Tree from All Genes☆33Updated 6 years ago
- ☆27Updated last year
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆16Updated last year
- Scripting analyses of genomes in Ensembl Plants☆38Updated this week
- ☆24Updated 2 weeks ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆56Updated 2 weeks ago
- Gene-tree Reconciliation Algorithm with MUL-trees for Polyploid Analysis☆13Updated last week
- ☆68Updated last week
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆32Updated 2 years ago
- Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data☆35Updated 9 months ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆29Updated 3 months ago
- A genome assembly assessment pipeline.☆37Updated last year
- ☆37Updated last year
- A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete with organelles (mitoch…☆16Updated 3 months ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆28Updated 2 weeks ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 3 years ago
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆20Updated 7 months ago
- Genome Annotation Pipeline☆35Updated 5 months ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆65Updated 3 years ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- Portable solution to generate genome alignment chains using lastz☆53Updated 3 months ago
- ☆44Updated 5 months ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated last year