Alternatives and similar repositories for csubst

Users that are interested in csubst are comparing it to the libraries listed below

• DessimozLab / OMArk
  ☆89Updated last month
• PacificBiosciences / pbtk
  PacBio BAM toolkit
  ☆48Updated 11 months ago
• abacus-gene / paml-tutorial
  paml documentation and tutorials
  ☆68Updated 3 weeks ago
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆49Updated 2 months ago
• nclark-lab / RERconverge
  Analysis of convergence between organismal traits and DNA/protein sequences
  ☆62Updated 3 weeks ago
• yeeus / GCI
  A program for assessing the T2T genome continuity
  ☆92Updated last month
• bcgsc / ntSynt-viz
  Multi-genome synteny block visualization tool
  ☆52Updated 3 weeks ago
• c-zhou / oatk
  A organelle de novo genome assembly toolkit
  ☆73Updated 11 months ago
• vlothec / TRASH
  RepeatIdentifier
  ☆71Updated 10 months ago
• LiaOb21 / colora
  A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete with organelles (mitoch…
  ☆32Updated 8 months ago
• KamilSJaron / k-mer-approaches-for-biodiversity-genomics
  k-mer learning materials
  ☆83Updated 11 months ago
• bcgsc / ntSynt
  Detecting multi-genome synteny using minimizer graph mapping
  ☆99Updated 3 weeks ago
• DessimozLab / FastOMA
  FastOMA is a scalable software package to infer orthology relationship.
  ☆90Updated last week
• PombertLab / SYNY
  The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.
  ☆49Updated last month
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆59Updated 2 years ago
• dePamphilis / PlantTribes
  PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics
  ☆38Updated 2 years ago
• rhysf / Synima
  Synteny Imager
  ☆65Updated last month
• CarineRey / pcoc
  Convergent substitution detection tool based on the PCOC model
  ☆31Updated 4 years ago
• BenoitMorel / GeneRax
  ☆77Updated 7 months ago
• jeffersonfparil / compare_genomes
  A comparative genomics workflow using Nextflow, conda, Julia and R
  ☆49Updated last year
• davidemms / STAG
  STAG: Species Tree from All Genes
  ☆34Updated 7 years ago
• PuttickMacroevolution / MCMCtreeR
  MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree
  ☆45Updated 6 years ago
• codialab / panacus
  Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
  ☆118Updated 2 weeks ago
• heche-psb / wgd
  wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication
  ☆37Updated 11 months ago
• Gaius-Augustus / Tiberius
  Tiberius is a deep learning gene finder.
  ☆92Updated this week
• fethalen / Patchwork
  Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data
  ☆36Updated last year
• phyloacc / PhyloAcc
  PhyloAcc a software to detect the changes of conservation of a genomic region
  ☆34Updated 3 months ago
• rderelle / Broccoli
  orthology assignment using phylogenetic and network analyses
  ☆54Updated last week
• Adamtaranto / teloclip
  A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
  ☆50Updated 2 months ago
• Dee-chen / Tree2gd
  ☆45Updated 3 years ago