kfuku52 / csubstLinks
Molecular convergence detection
☆43Updated 3 weeks ago
Alternatives and similar repositories for csubst
Users that are interested in csubst are comparing it to the libraries listed below
Sorting:
- ☆81Updated 2 weeks ago
- Analysis of convergence between organismal traits and DNA/protein sequences☆58Updated this week
- BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins☆81Updated last year
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- PacBio BAM toolkit☆46Updated 8 months ago
- FastOMA is a scalable software package to infer orthology relationship.☆83Updated this week
- TSEBRA: Transcript Selector for BRAKER☆48Updated 11 months ago
- Algorithm For Gene Order Reconstruction in Ancestors☆77Updated 2 months ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Updated 2 years ago
- A organelle de novo genome assembly toolkit☆70Updated 8 months ago
- paml documentation and tutorials☆62Updated 5 months ago
- Tiberius is a deep learning gene finder.☆78Updated this week
- ☆45Updated 2 years ago
- TEtrimmer: a novel tool to automate manual curation of transposable elements☆102Updated 3 weeks ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 8 months ago
- A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete with organelles (mitoch…☆29Updated 5 months ago
- A program for assessing the T2T genome continuity☆88Updated 2 weeks ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆83Updated 4 years ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- Convergent substitution detection tool based on the PCOC model☆31Updated 3 years ago
- Scripting analyses of genomes in Ensembl Plants☆40Updated 3 weeks ago
- A comparative genomics workflow using Nextflow, conda, Julia and R☆45Updated last year
- A tool for evaluating long-read de novo assembly results☆48Updated last year
- Multi-genome synteny block visualization tool☆47Updated last week
- PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics☆37Updated 2 years ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆33Updated 9 months ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆70Updated last month
- Python package and CLI for whole-genome duplication related analyses. **This package is deprecated in favor of** https://github.com/heche…☆86Updated 2 years ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆33Updated 6 months ago
- ☆44Updated 8 years ago