ArimaGenomics / Arima-SV-PipelineLinks
☆13Updated 2 months ago
Alternatives and similar repositories for Arima-SV-Pipeline
Users that are interested in Arima-SV-Pipeline are comparing it to the libraries listed below
Sorting:
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆19Updated 5 years ago
- Pan-3D genome analysis of soybean Hi-C data☆12Updated 2 years ago
- Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species r…☆23Updated last year
- ☆16Updated 2 years ago
- HiSV: a computational pipeline for structural variation detection from Hi-C data☆18Updated 5 months ago
- The tools are used for displaying hic signal of genome☆24Updated 4 years ago
- ☆23Updated 3 years ago
- A comprehensive pipeline for RNAseq data analysis☆22Updated last year
- Identification of conserved non-coding sequences in plants☆30Updated 2 months ago
- A pipeline for identifying conserved topologically associating domain boundaries among multiple species.☆16Updated 5 months ago
- ☆16Updated 3 years ago
- This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings☆12Updated 4 years ago
- hot_scan is a free software to detect genomic regions unusually rich (hotspot) in a given pattern via scan statistics☆10Updated 12 years ago
- Invertory of TE-gene isoforms☆13Updated 2 years ago
- Code for TAD_SV project☆11Updated 3 years ago
- ☆29Updated 2 years ago
- Scripts that used in our chicken T2T manuscript.☆22Updated 2 years ago
- Methods and recipes for Plant Genome Annotation - Transposable Elements☆20Updated 6 months ago
- Extract longest transcript or longest CDS transcript from GTF annotation file or gencode transcripts fasta file.☆20Updated 3 years ago
- Cantù Lab @ UC Davis - Annotation pipeline - EVM based☆14Updated last year
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 5 years ago
- conserved non-coding sequence☆16Updated 3 years ago
- ☆16Updated 2 years ago
- ☆14Updated 3 years ago
- ☆11Updated this week
- Simple tools for working with Hi-C data☆18Updated 6 years ago
- ☆11Updated 3 years ago
- Main scripts and commands used to analyze goat population genetic and domestication☆19Updated 6 years ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated last year
- Construct and Analyze the North American Vitis pangenome☆27Updated 3 months ago