ArimaGenomics / Arima-SV-PipelineView external linksLinks
☆13Jan 20, 2026Updated 3 weeks ago
Alternatives and similar repositories for Arima-SV-Pipeline
Users that are interested in Arima-SV-Pipeline are comparing it to the libraries listed below
Sorting:
- Code for TAD_SV project☆11Mar 16, 2022Updated 3 years ago
- ☆13Nov 15, 2017Updated 8 years ago
- Scripts for Wang et al (2020) Evidence for widespread selection in shaping the genomic landscape during speciation of Populus.☆11Feb 15, 2020Updated 6 years ago
- Arima Capture HiC pipeline (Arima-CHiC)☆11May 16, 2024Updated last year
- General analysis of HiC data, including compartment A/B, domains and loops.☆14Feb 17, 2023Updated 3 years ago
- Pan-3D genome analysis of soybean Hi-C data☆12Mar 6, 2023Updated 2 years ago
- ☆12Jul 19, 2019Updated 6 years ago
- ☆12Sep 6, 2019Updated 6 years ago
- Script to help assessing the evolutionary history of a TE family☆16Sep 5, 2019Updated 6 years ago
- ☆15Aug 6, 2018Updated 7 years ago
- Annotate Olfactory receptor CDS from genome☆10Apr 29, 2023Updated 2 years ago
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆19Jul 13, 2020Updated 5 years ago
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆21Jan 21, 2026Updated 3 weeks ago
- ☆41Jun 8, 2023Updated 2 years ago
- ☆25Nov 29, 2022Updated 3 years ago
- ☆26Jan 26, 2026Updated 3 weeks ago
- Pipelines to run STRUCTURE using multiple front-ends (CLUMPAK+StrAuto, Structure_threader)☆11Oct 5, 2020Updated 5 years ago
- ☆11Sep 1, 2022Updated 3 years ago
- Phylogenetic iDentification of Subgenomes☆10Jul 7, 2022Updated 3 years ago
- Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit☆11Jan 17, 2020Updated 6 years ago
- Newick tree processing☆13Updated this week
- Programs for performing various population genetic analyses☆11Dec 2, 2024Updated last year
- This python script can be used to detect Whole-genome duplication (WGD) with the dS based method.☆25Feb 22, 2019Updated 6 years ago
- Scripts and procedures for detecting positively selected genes and codons in primates☆22Nov 14, 2020Updated 5 years ago
- Genome alignment and synteny plots☆33Jun 5, 2023Updated 2 years ago
- hot_scan is a free software to detect genomic regions unusually rich (hotspot) in a given pattern via scan statistics☆10Oct 17, 2013Updated 12 years ago
- Code used to analyse WGS data of giraffe in Coimbra et al. 2021☆11Oct 15, 2023Updated 2 years ago
- Killifish genomics scripts☆12Feb 19, 2021Updated 4 years ago
- From the comparison of two extant genomes and corresponding gene families, PhylDiag detects conserved segments, i.e. segments of chromoso…☆15Aug 7, 2023Updated 2 years ago
- Study of TE evolution in a population of genomes☆10Dec 11, 2023Updated 2 years ago
- This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings☆12Oct 1, 2021Updated 4 years ago
- ☆12Jun 12, 2023Updated 2 years ago
- Gennome annotation scripts for the crickets Gryllus bimaculatus and Laupala kohalensis.☆13Feb 28, 2022Updated 3 years ago
- Some components that speed up and reduce resource cost for original ALLHiC☆14Jun 21, 2025Updated 7 months ago
- De-novo Assembly Structural Variant Caller☆13Sep 15, 2016Updated 9 years ago
- MP-EST estimates species trees from a set of gene trees by maximizing a pseudo-likelihood function☆12Oct 31, 2025Updated 3 months ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆31Jan 3, 2022Updated 4 years ago
- profile the repeat landscape in a genome☆16Sep 9, 2014Updated 11 years ago
- HiSV: a computational pipeline for structural variation detection from Hi-C data☆18Jun 20, 2025Updated 7 months ago