Alternatives and similar repositories for Self-use-bioinformatics-scripts

Users that are interested in Self-use-bioinformatics-scripts are comparing it to the libraries listed below

• EvanForsythe / ERCnet

  View on GitHub
  ☆14Oct 27, 2025Updated 3 months ago
• kfuku52 / nwkit

  View on GitHub
  Newick tree processing
  ☆13Updated this week
• Chenghong412 / sheep_introgression

  View on GitHub
  ☆11Sep 1, 2022Updated 3 years ago
• DyogenIBENS / PhylDiag

  View on GitHub
  From the comparison of two extant genomes and corresponding gene families, PhylDiag detects conserved segments, i.e. segments of chromoso…
  ☆15Aug 7, 2023Updated 2 years ago
• oeco28 / Cacao_Genomics

  View on GitHub
  This is a basic repository with all the scripts necessary to reconstruct the data analysis from our work on the 200 Genomes
  ☆12Aug 31, 2018Updated 7 years ago
• gao-lab / LOST_and_FOUND

  View on GitHub
  ☆13Apr 7, 2023Updated 2 years ago
• dongyawu / PangenomeEvolution

  View on GitHub
  scripts used in Rice Pangenome Projects (Evolution).
  ☆13Oct 29, 2023Updated 2 years ago
• xiekunwhy / kmerDedup

  View on GitHub
  Reduce genome assembly redundancy using shared mapped k-mer method.
  ☆15Apr 28, 2025Updated 9 months ago
• GenisGE / evalAdmix

  View on GitHub
  ☆15Apr 22, 2024Updated last year
• nbedelman / DiscovarCompGenomics

  View on GitHub
  ☆12Sep 6, 2019Updated 6 years ago
• Tom-Jenkins / utility_scripts

  View on GitHub
  Scripts for population genetics analysis
  ☆20Nov 10, 2022Updated 3 years ago
• mjsull / DiscoPlot

  View on GitHub
  Visualising discordant reads
  ☆15Sep 2, 2015Updated 10 years ago
• JBerthelier / ParasiTE

  View on GitHub
  Invertory of TE-gene isoforms
  ☆14Sep 18, 2023Updated 2 years ago
• nlapalu / SDDetector

  View on GitHub
  Segmental duplication detection tool
  ☆16Feb 7, 2023Updated 3 years ago
• wk8910 / assemble_pipeline

  View on GitHub
  Assemble and following pipeline used in wisent genome paper.
  ☆17Dec 23, 2016Updated 9 years ago
• jingwanglab / Populus_genomic_prediction_climate_vulnerability

  View on GitHub
  ☆44Nov 6, 2022Updated 3 years ago
• quanc1989 / SV-ONT-Tibetan

  View on GitHub
  Characterization of Structural Variation in Chinese samples
  ☆18Dec 22, 2021Updated 4 years ago
• jingwanglab / Populus-Genomic-Consequences-of-Hybridization

  View on GitHub
  ☆16Jan 6, 2022Updated 4 years ago
• Shuhua-Group / ArchaicSeeker2.0

  View on GitHub
  ArchaicSeeker is a series of software for detecting archaic introgression sequences and reconstructing introgression history. The latest …
  ☆19Aug 6, 2025Updated 6 months ago
• linudz / caastools

  View on GitHub
  CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.
  ☆23Nov 21, 2023Updated 2 years ago
• grahamgower / demesdraw

  View on GitHub
  Drawing functions for Demes demographic models
  ☆24Feb 2, 2026Updated last week
• DyogenIBENS / SCORPIOS

  View on GitHub
  SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event.
  ☆23Sep 23, 2024Updated last year
• wk8910 / bio_tools

  View on GitHub
  Useful bioinformatic scripts
  ☆60Nov 26, 2024Updated last year
• MaoYafei / GenoDup-Pipeline

  View on GitHub
  This python script can be used to detect Whole-genome duplication (WGD) with the dS based method.
  ☆25Feb 22, 2019Updated 6 years ago
• melindacmills / IntroStatisticalGenetics

  View on GitHub
  GitHub site to accompany Textbook Introduction to Statistical Genetic Data Analysis
  ☆30Mar 12, 2020Updated 5 years ago
• ellenbell / FasTE

  View on GitHub
  A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…
  ☆27Dec 7, 2022Updated 3 years ago
• shenglin-liu / vcf2sfs

  View on GitHub
  R functions for generating site frequency spectra (SFS) from a VCF file.
  ☆28Feb 13, 2020Updated 6 years ago
• tanghaibao / bio-pipeline

  View on GitHub
  My collection of light bioinformatics analysis pipelines for specific tasks
  ☆79May 20, 2024Updated last year
• PuttickMacroevolution / MCMCtreeR

  View on GitHub
  MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree
  ☆45Nov 21, 2019Updated 6 years ago
• symgenoevolab / SyntenyFinder

  View on GitHub
  SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…
  ☆35Jan 15, 2025Updated last year
• wlz0726 / Population_Genomics_Scripts

  View on GitHub
  Scripts of population genomics analysis
  ☆36May 8, 2018Updated 7 years ago
• ToHanwei / Genome2OR

  View on GitHub
  Annotate Olfactory receptor CDS from genome
  ☆10Apr 29, 2023Updated 2 years ago
• carolindahms / TreeMix

  View on GitHub
  Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…
  ☆42Mar 7, 2024Updated last year
• qunjie-zhang / gfanno

  View on GitHub
  Gene Family Annotation Workflow
  ☆11Mar 26, 2024Updated last year
• similab / FSTest

  View on GitHub
  An efficient tool for cross-population fixation index estimation on variant call format files
  ☆11Jan 12, 2024Updated 2 years ago
• arvestad / jprime

  View on GitHub
  Probabilistic Inference of Molecular Evolution
  ☆10Sep 6, 2021Updated 4 years ago
• jlab-code / MethylStar

  View on GitHub
  A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.
  ☆37Sep 24, 2021Updated 4 years ago
• simonhmartin / twisst

  View on GitHub
  Topology weighting by iterative sampling of sub-trees
  ☆84Jan 5, 2025Updated last year
• delehef / asgart

  View on GitHub
  A genome-scale, fast, and precise segmental duplications mapping tool
  ☆35Sep 11, 2024Updated last year